Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23740 1066 / 0 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G22740 139 / 2e-33 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 131 / 7e-31 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 125 / 2e-29 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G13960 125 / 2e-29 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT5G04940 122 / 3e-28 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT3G04380 114 / 2e-26 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT3G03750 112 / 2e-26 SUVR3, SDG20 SET domain protein 20 (.1.2) AT1G04050 109 / 4e-24 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT4G30860 107 / 5e-24 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016788 [exp] 2380 / 0 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10001011 [exp] 160 / 9e-40 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 159 / 2e-39 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 159 / 2e-39 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10002571 [exp] 142 / 5e-35 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 138 / 3e-33 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 137 / 8e-33 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 135 / 1e-32 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 131 / 5e-31 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033000 [exp] 1620 / 0 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 1585 / 0 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G162801 [exp] 154 / 3e-38 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 149 / 3e-36 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 137 / 4e-33 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 134 / 5e-32 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 126 / 2e-29 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.013G064600 [exp] 120 / 4e-29 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.003G188700 [exp] 122 / 4e-28 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.014G192500 [exp] 119 / 4e-27 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10022483 pacid=23171654 polypeptide=Lus10022483 locus=Lus10022483.g ID=Lus10022483.BGIv1.0 annot-version=v1.0 ATGATTCTGCAGCAACATGCATTGCTCTTGCTGATGTCTTCCGTTTCCCCGCCTCCCTTCCTGTTACAACAGGAACTATATAATTCCATCTTGTGGAATA AAGTCAACTCTCTTGGGGATGCATCAGTGCAATCAACATTAGGCTCTGAGTGGAAAACCTGGAAGCATGAAGTTATGAAATGGTTTTCAACATCTCACCC CTTATCTGCTGGTGGAGAGACAGAGCATAGACGTTCTGGTAGCCCTTCAGCAGTAGGACATCAAGTAAATCTGAAAAGGCAAAAGCTTGAAGTTCGCCGT GCTGAGCCACATGCTGTGCAAGTGGAAATGATCCATCCACTGCAAACTATGACAGTGGATATTGATTCCGAGTTCTTCAGCAATCGAGAAACTACGAGCA GTGCACCTTTGTCAACAGGACTATCCAAAGTGGAAGATATCCAAAAAGGAGCCATGCCAATAGATTCTCCTAGTAGTGTGCCTGGTAGATGGGATGGAAT TGTTGTAGAAGCTGCAAGTTCCTTGCCTAGATCTAGCAAGGGGGCAGAAAAAACTCCTCCGAGTGGCCTCATGGTTATGAATGCTACAGATCCTGGTAGT AGTAGGAACAGGCAGTGCACTGCTTTCATTCAGTCTAAGGGTAGGCAATGTGTGAGGTGGGCAAATGAAGGTGATGTCTACTGCTGTGTGCATCTAGCCT CCCGTTTCACAGGTAGCTCTACCAAGGGAGAGGTAAGTTCTCCAGTCTATAACCCAATGTGTGACGGAACCACAGTACTCGGTACTCGATGCAAACACCG TTCTCTGCCAGGTTCTTCATTCTGTAAGAAACACGGACCAAAGACAGATACCAATTCACTACAGAATTCACTCAAAAGAAAGCACAATGTATTTGTTTCA ACTCCAGAAACATCACAGTGTAGGGATATAGTGCTATTTGAACAAGCTGAAAGTCCCCTTCAAGTGGAGCCTGTCTCAGTCATGGCATGTGATAATGGTG ATTCATACCATGCAATAAATGGTTTATCGGGTATGTTTGATGAGTCCAGTATGAATTATCCTGGTAAAGAGGTGCAGCATTGCGTAGGTTCAAACGCTTT GGATAACACTGGTCCTTGTCATGAAACCCCGAAGCGCTATACATTATACTGTGATAGCCACATCCCAAGTTGGCTTAAGCGTGCAAGGAATGGTAGGAGT AGAATAATATCAAAAGAGGTATTTCTGGATCTCTTGAAAGGTTGTTGCTCTGTGGAGCAAAAGTTGCACTTACACAAAGCATGTGAGTTATTTTACAAAC TCTTCAAGAGCATTTTGTCTCTAAGAAACCCAGTTCCGTTAGAAGTTCAACTTCAGTGGGCCCTGACTGAAGCTTCTAAAGATTTTGGGGTGGGGGAGTT CTTGCTGAAGTTAGTTTGCACTGAAAAAGAGAGACTGGGAAGCATCTGGGGCCTTGGTGGTGATGAAGATCCTCATGTTTTACCCTCTCGTGTTGGAAAA TCAGCAGTTTTACCCACGCCTATTGATGGCGGTCATGAAGATGGACAATATATTAGGTGCAAGATTTGCTTTGACAAGTTTACTGATGACCAAGAACTTT GCAGTCACTGGATGGACAATCATAAAAAGGAGGCACAATGCCTGTTCAGAGAGCATGCTTGTGCTATTTGTCTCGATTCTTTTACAGATAAAAAAGGTTT AGAAGCACATGTGCAGGACAGACATCATGTGCAGTTTGTTGAACAATGCATGCTTCTTCTTTGCATCCCATGTAAAAGTCACTTTGGCAATGCTGAACAG TTATGGTCACATGTCCTCTCAGTTCACCCACTTGATTTTAGAGTGGAAAAATCTGATCAACAGCTTATTGTTTCTGCGCCTGATCTTAAGCAGAAACTCA AGCAAACAGCTGAGCTGGATAATGGATCTTTTGACAAAACTACCACTAGTAATCCAAATGGTGTACGGAAATTTATTTGCAGGTTCTGTGGTTTGAAGTT CGACCTCCTGCCTGATCTTGGTCGCCACCATCAGGCTGCTCATATGGGACCAAATATATTGAACTGTCGACCCCAAAAGAAAAGAATTGGCTACTATGCT TATAGATCAAAATCTGGTAGACTTACCCGTCCAAGATTTAAGAAAGGTATGGCTACAGCTGCATACAGGATCAGGAATAGGGCTAATGCTAGTTTGAAGA AACGTATCCAGGCTACTAAGTCACTGAGTTCCATGGACTTAAATGTTCAGCCTCGCTTAAGTGATCCAACGGCTCTTGGTCGGTTGGCCGAATCTCAATG CTCAGCAGTTGCTAAGATTCTGTTTTCTGAGATTCAGAAGACCAAACCTCGGCCAAATAACCCTGAAATTTTAGCTACTGCACGCTCTGTGTGCTGCAGG GTGAGCCTAAAAGCGTCCCTTGAGGGCAAGTATGGACTATTGCCAGAACGTTTTTATCTCAAAGCAGCCAAACTGTGCAGTGAGCATAATATTCAAGTGG AGTGGCATCATGAAGGATTTGTTTGTCCCAGAGGATGCAAGAGTTTTAAGGACCTCGAGTTGCAATCACCCTTGGTCCCACTTCCTAATGTTCCCACAGG AAAACGGTCAGATAATTCTTTGAATCATGTCCACGATGATTGGCTGGTGGATGAATGCCACTATATTATTGATTTGGATGATGTTAGAGAGGAAAGTAAG CGAAAAGTAGTTGTCCTGTGTCAGGACATCAGCTTTGGTAAGGAGTCGATACCAATTGCTTGTGTGGCAGACGAGCAGTTAATCAATTCCCTTGACGGCC CGGCAGATAACTCAGATGTTCAAAACACTGTTAGGCCTTGGGAATCCTTCACCTACCTAACTAACACATTATTTAATCATTCCAGCGATCCTGATTTTGA GAGTTTGCAGGTTGGATGCTCCTGTCCAAATTCAGTGTGCTGTTCTGAAACATGTGATCATGTTGACCTCTTTGATGATGATTATGAAGATGCAAAAGAC ATATATGGAGCGCCAATGCATGGAAGATTTCCATATGACGATAAAGGAAGGATAATCCTGGAGGAGGGATACCTTGTTTATGAGTGTAACAATATGTGTA GTTGCAATAATACATGCCCAAATAGAGTACTGCAGAATGGAGTACGTGTGAGGTTGGAAGTTTTCAAAACAGAAAATAAGGGCTGGGCAGTCAGGGCAGG TGAACATATCCTACGTGGCACATTTATATGTGAATACATTGGAGAAGTGTTAGGCGAAGATGAGGCGAATAAGAGGCGAATAAGCTATGGCGAAGGTGGT TGCAGTTATATGTATAGTATTGATGATCATACGAATGACATGAGCAGAATGATACAAGGGGAAGCCGACTACGTCATTGATGCCACAACTTATGGAAATG TGTCGCGGTTCATAAATCACAGCTGCTTACCAAATCTTGAAACCCATCAAGTTATTATCAATAGCATGGATTCTCAGCGCTCTCATATTGGCCTCTATGC AAGTCGAGATATAGCTTATGGTGAAGAACTGACGCACAACTACCGGTACAATAGTGTGCCTGGACAAGGACATCCATGCCATTGTGGTACCTCCAGATGT CGTGGCCGCCTGTACTGA
AA sequence Show only first row Show all	>Lus10022483 pacid=23171654 polypeptide=Lus10022483 locus=Lus10022483.g ID=Lus10022483.BGIv1.0 annot-version=v1.0 MILQQHALLLLMSSVSPPPFLLQQELYNSILWNKVNSLGDASVQSTLGSEWKTWKHEVMKWFSTSHPLSAGGETEHRRSGSPSAVGHQVNLKRQKLEVRR AEPHAVQVEMIHPLQTMTVDIDSEFFSNRETTSSAPLSTGLSKVEDIQKGAMPIDSPSSVPGRWDGIVVEAASSLPRSSKGAEKTPPSGLMVMNATDPGS SRNRQCTAFIQSKGRQCVRWANEGDVYCCVHLASRFTGSSTKGEVSSPVYNPMCDGTTVLGTRCKHRSLPGSSFCKKHGPKTDTNSLQNSLKRKHNVFVS TPETSQCRDIVLFEQAESPLQVEPVSVMACDNGDSYHAINGLSGMFDESSMNYPGKEVQHCVGSNALDNTGPCHETPKRYTLYCDSHIPSWLKRARNGRS RIISKEVFLDLLKGCCSVEQKLHLHKACELFYKLFKSILSLRNPVPLEVQLQWALTEASKDFGVGEFLLKLVCTEKERLGSIWGLGGDEDPHVLPSRVGK SAVLPTPIDGGHEDGQYIRCKICFDKFTDDQELCSHWMDNHKKEAQCLFREHACAICLDSFTDKKGLEAHVQDRHHVQFVEQCMLLLCIPCKSHFGNAEQ LWSHVLSVHPLDFRVEKSDQQLIVSAPDLKQKLKQTAELDNGSFDKTTTSNPNGVRKFICRFCGLKFDLLPDLGRHHQAAHMGPNILNCRPQKKRIGYYA YRSKSGRLTRPRFKKGMATAAYRIRNRANASLKKRIQATKSLSSMDLNVQPRLSDPTALGRLAESQCSAVAKILFSEIQKTKPRPNNPEILATARSVCCR VSLKASLEGKYGLLPERFYLKAAKLCSEHNIQVEWHHEGFVCPRGCKSFKDLELQSPLVPLPNVPTGKRSDNSLNHVHDDWLVDECHYIIDLDDVREESK RKVVVLCQDISFGKESIPIACVADEQLINSLDGPADNSDVQNTVRPWESFTYLTNTLFNHSSDPDFESLQVGCSCPNSVCCSETCDHVDLFDDDYEDAKD IYGAPMHGRFPYDDKGRIILEEGYLVYECNNMCSCNNTCPNRVLQNGVRVRLEVFKTENKGWAVRAGEHILRGTFICEYIGEVLGEDEANKRRISYGEGG CSYMYSIDDHTNDMSRMIQGEADYVIDATTYGNVSRFINHSCLPNLETHQVIINSMDSQRSHIGLYASRDIAYGEELTHNYRYNSVPGQGHPCHCGTSRC RGRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	0	1
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	1.4	0.8997
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	1.7	0.8878
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	3.7	0.8896
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	8.1	0.8252
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	8.8	0.8557
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	10.7	0.8595
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	10.8	0.8728
AT3G61690			nucleotidyltransferases (.1)		Lus10030267 [exp]	11.0	0.8397
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	13.5	0.7760
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	14.7	0.8503

Compare expression of checked genes

Lus10022483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.