Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50780 576 / 0 unknown protein AT1G63850 325 / 2e-105 BTB/POZ domain-containing protein (.1) AT5G60050 302 / 3e-97 BTB/POZ domain-containing protein (.1) AT2G13690 198 / 5e-57 PRLI-interacting factor, putative (.1) AT3G05675 77 / 5e-15 BTB/POZ domain-containing protein (.1.2) AT3G19920 45 / 0.0001 unknown protein AT2G24692 38 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016789 [exp] 595 / 0 AT3G50780 408 / 1e-140 unknown protein Lus10024658 [exp] 334 / 2e-108 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 330 / 2e-106 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 311 / 3e-99 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 272 / 2e-85 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 265 / 1e-82 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10020892 [exp] 187 / 1e-52 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10033484 [exp] 185 / 4e-52 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 84 / 7e-17 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032800 [exp] 717 / 0 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 657 / 0 AT3G50780 623 / 0.0 unknown protein Potri.001G100900 [exp] 340 / 5e-110 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 321 / 1e-102 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 311 / 6e-101 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G058700 [exp] 211 / 1e-61 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 205 / 1e-59 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.006G202900 [exp] 85 / 2e-17 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.004G154600 [exp] 82 / 2e-16 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G086100 [exp] 61 / 9e-10 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022484 pacid=23171724 polypeptide=Lus10022484 locus=Lus10022484.g ID=Lus10022484.BGIv1.0 annot-version=v1.0 ATGGCTGAAATCAAACTTCCAAAGGTCGAACAAGGGCACACCAAAATCAGAAATGTCCCAATTGCTGTAACCCCAGAAGGCTTCTGGTGCTGTCCTTCTC CTAACTGTGAGGATCACAGAAATTGTGGCACTGATGTACCTACAGTTGGTACCGATAGAGGACCACGGCCTAAAGTTGAGAATGCTCCTAAGAAGGTTGC TATTGAGTTTGGGGAGCCCGGAACTAGTGACTTGAAGGTGATCTTACTTGGAAAGCAGGGATTTTCTGTGAAGCTGAGTGTTCACAGGAATGTCTTGATC GAAAGTAGCAAATTCTTTGCTGATAAGCTGTCTGAGTTGGCGTCTAACTTGCCATGTTTGGAGATTGGTGATTGTGAGGACATTGAGATACATGTTGAAA CTGTGGGACTAATGTATTGCAAAGAGATGAAGCAACGGTTGATCAAGCAGAGTCTGACTCGCGTGCTTCGAATTCTCAAGGTTGCTGAACTTCTGGGCTT CAGTTCATGCATACAGTCATGCTTGGAATATCTAGAAGCAGTTCCATGGATTGGTGAAGAAGAAGAGGAGAAGGTTGTCTCTACTGTCCTTCAACTTCAG AATGAGGGCATCGGAGTATCACCAATTCTGAAACGGATTTCGTCTAATGATTCTGCTCCACCTAAGGACACACTGCCTGACATATTAGAACTAGTTCTCA AAAGCAGAGAGGAAGTAGGGCGTCGTGAAATGAAATCTATTGTCCTGAAGCTTCTTCGAGAGAGCAACAATCTTCCAAGCCCTGTTGATGTCTGCAATCA AAGTCTTTACAACTCATGCACAAGTTGCTTGAACTCGCTGCTATCTTTTTTCCAGCAAGCTGCCGAAGTCGAGTTTGTTTCCAAGCCAATGGACAACAAG GAACCAGTGTTGAAACAAATAGCCCTCGAAGCTGATAATCTCTTGTGGTTGCTTGACATCTTAGCCGACAGACAAGTAGCAGATGAGTTTGCTGCAATGT GGACAGTGCAGTATGAGTTAGCAGCATTACATACGATTCTTCCAGTAATAACTCGGTACCATGTTAGTTGTATAACTGCGAGACTGTTTATTGGGATAGG TAGAGGGGAACTGCTACCATCTAAGGACAATCGTCAATTGTTGGTAGAGACCTGGCTGCAGCCATTGATGAATGACTACAGTTGGTTAACACATGGTTAC AGATCATTCGACAGAAAAGTTGTGGAAGAAGGAATTGGAAGGACAATCCTCACACTTCCATTGGAGAAGCAACAGAGCATTTTGCTTTCTTGGTTGGGAA GTTTCTTGAAGGCTGGTGATAGCTGCCCCAATCTGCAAAAGGCTTTTGAGGTCTGGTGGAGGCGAGCCTTCATTAGACCTTACCTTCAAAGTCAAGGCAA TAACATTCGACACTCCGAGCCAGTAGAAACTTCTGTAATGACATCAGAAGAATGA
AA sequence Show only first row Show all	>Lus10022484 pacid=23171724 polypeptide=Lus10022484 locus=Lus10022484.g ID=Lus10022484.BGIv1.0 annot-version=v1.0 MAEIKLPKVEQGHTKIRNVPIAVTPEGFWCCPSPNCEDHRNCGTDVPTVGTDRGPRPKVENAPKKVAIEFGEPGTSDLKVILLGKQGFSVKLSVHRNVLI ESSKFFADKLSELASNLPCLEIGDCEDIEIHVETVGLMYCKEMKQRLIKQSLTRVLRILKVAELLGFSSCIQSCLEYLEAVPWIGEEEEEKVVSTVLQLQ NEGIGVSPILKRISSNDSAPPKDTLPDILELVLKSREEVGRREMKSIVLKLLRESNNLPSPVDVCNQSLYNSCTSCLNSLLSFFQQAAEVEFVSKPMDNK EPVLKQIALEADNLLWLLDILADRQVADEFAAMWTVQYELAALHTILPVITRYHVSCITARLFIGIGRGELLPSKDNRQLLVETWLQPLMNDYSWLTHGY RSFDRKVVEEGIGRTILTLPLEKQQSILLSWLGSFLKAGDSCPNLQKAFEVWWRRAFIRPYLQSQGNNIRHSEPVETSVMTSEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50780			unknown protein		Lus10022484 [exp]	0	1
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	3.5	0.8232
AT2G40820			unknown protein		Lus10038998 [exp]	3.5	0.8601
AT3G11590			unknown protein		Lus10017001 [exp]	3.5	0.8486
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	4.9	0.8176
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	5.7	0.7950
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	6.3	0.8351
AT3G11590			unknown protein		Lus10021324 [exp]	6.5	0.8205
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	7.3	0.8444
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	7.3	0.8164
AT2G40820			unknown protein		Lus10027293 [exp]	8.2	0.8382

Compare expression of checked genes

Lus10022484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.