Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66631 645 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33580 196 / 3e-52 Protein kinase superfamily protein (.1) AT3G21630 178 / 1e-46 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 160 / 2e-40 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G01840 159 / 3e-40 Protein kinase superfamily protein (.1) AT2G17220 147 / 7e-38 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G02010 149 / 8e-37 Protein kinase superfamily protein (.1) AT3G59350 137 / 7e-35 Protein kinase superfamily protein (.1.2.3) AT5G02290 137 / 2e-34 NAK Protein kinase superfamily protein (.1.2) AT3G58690 137 / 2e-34 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016793 [exp] 1070 / 0 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10016792 [exp] 450 / 2e-147 AT5G66631 328 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019662 [exp] 435 / 2e-141 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10000577 [exp] 226 / 3e-62 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022345 [exp] 214 / 3e-58 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1) Lus10022488 [exp] 213 / 4e-58 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 201 / 9e-56 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10008586 [exp] 197 / 2e-52 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10021889 [exp] 194 / 2e-52 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128600 [exp] 774 / 0 AT5G66631 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G032300 [exp] 623 / 0 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128401 [exp] 379 / 5e-122 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 329 / 4e-99 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 314 / 9e-94 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.005G128501 [exp] 219 / 1e-64 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 229 / 4e-63 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 224 / 3e-62 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 213 / 2e-58 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 189 / 7e-50 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022487 pacid=23171656 polypeptide=Lus10022487 locus=Lus10022487.g ID=Lus10022487.BGIv1.0 annot-version=v1.0 ATGAATTTCAGCCGGTTTCCACGAAGCATCGCTCAGTTCAGCAGCCTGAAACAGCAAATTGGCGTCGTTGCCCGTGATCCCTTCCCTAACAAGCTCACCC ATTATCTTCTACGAGCCGAGCTTATCAATGCCATTCGACTCCAGCTCCGGTCCAAGGAATCCAGCTCGCTCCTAACACTACTGAACAATCGACTATCAGA CGCATTTGTAGTCACGCACGCCATCCGTTCTGTTCCAAATCATGAGTCTGCGATTTCTCTTGTTGAAATGCTCAAGGATGTCCCTCATTTTCAGCACAAT CAAGCTACAGTCCACGCATTTGCCACCGTTCTGGCCAAGTCAGGCAGGACTTGTGAACTGAAGTCCCTCATTCAAGATATTCAAAGCGAGAGATATCCTC GAGTTCGGGTTAACTTCATGAATCTCATGTATTGGTATGCCGCTGCTGGGGATACGAAGGCGGTTCTGCATATTTGGAACGAGTATAGAGGAAGCAGTGA TAGGCGTCTATGCACGGAGTCCTATAACATTGTTATGAGAATTCATGTTCAGCAGCGGAATGATCTTGAGGCAGTAAATGTGTTCTTTTCAATGATCGAT GAAGGGGCTATTCCCAATTCGAGAACTTACACAGTTATGATTGAGCATCTTGTTGAGTGTGGGAAACTGGATTCAGCTTTAGAGGTTTTTAATGTTTTGC CAAGGATGAGGGTCAAGAGGACGTCGAAACAGTACTTGGTTTTGGTGGATGGGTTTGTGCAGGCTAAGAGATTTGACGAGGTCAAAATTCTATTTGAGGT GATGAAGGCTGATGGGAAGTACCCTTGCCGCGCAATGTGGATGGCTCTACAGGAGTTAAAGGAGGCAGGATTTGTAGAAGAGACGGACTTGCTTCTGGAA GGAATGTTTCCCGACGAGAGGATCAAGAGCATTATTTCTCGATCGGAAAGCAGCGATGAGGACAGAGATGGGAATGAAGAGGAGAGCTTTGAGGTGAGTG GTGCTGTTGATTTGGATATTCATGATGTTGTCAAGTTGAAACCATGGTTGGATTCAAAAGCATTGGCAGATGCGTTGAGTACATGGAACCCTGCTGTTAT AGCCATACTAGAGAGTTCGGAATTTGTATGGACTACTAGGTTGGTATGTAAGGTTCTGAGAAATTTTAAATCACCAGACACAGCTTGGGGTTTCTTTTGT TGGGTTGCATATCAACCAGGTTTCACTCATGACGTTTACACTGTCCAAAGAATGATTGCCATTTTATCCCGGCATGGTAAGGTTGAACTGGTTGATAAGC TTATAGCAAAGGTAAGAAACGAGGGAATGACAATGCCTTTTAGTACCATCAGATTGATAATTGAGTTCTATGGCATCTCAAAAAATGCTGATGCTGCTTT AAAGGTCTTCCGTGATGATAGAGCACAGTGTGGTCACATAAACAAATATAATTTGATGATTCTGTATTCAGCCCTCTTGCGAACATTGACCAAATGCAAG AGAGATTCTGATTCCATTGAGGTGCTTGAAGAGATGATGTGTTGTGGGATATGCCCTGATAGCCAAACGTTTTCTGGGTTAATTTACTATTTTGCATTAC AAGGAGATTTGAAGACAGTGCAGAAGCTATTTACGATGGTCAGGCAGAATGGTGTGGGACCAGATGCTTACATGTTCAAAGTACTGATCCAAGCATATTG CAAACGTGATAGGGCTGCTCTTGCATTAAGGGTTTTCGAAGACATGAGGAACTCTAATTTGATGCCTGATCCGGTTACTAAGGATTTGCTTGTGAAGAGT CTCTGGAAAGAAGGGAAAAGGAAAGAGGCAGCTAGTGTTGTAGAAAGTTGTGAAGAATCAAATCAAGTCCTTCCACTTGTACTGCGAGGTCATATATGGA CAGTGAGCTGTGCTGATCTCACAAGACCACCACCAATAACTGATTTCTCCTGCTCTACTTATGGGGAGCCTACTCATCCTTGTGACACCTATGTGTCATA CCATGTTCAGTCACCAAACTTCCTGAACCTCAGTAATATTTCTGATCTCTTTGGAGTCAGCCGATTGTTGATAGCAACTGCCAGTAACTTGGCCTCTGAG GATAGCCCATTGGTTCCGGATCAACTGTTGCTTGTGCCTATAGAGTGTGGATGCACAGGAAACAGTTCGTTTGCAAATCTCACTTACCAAATCAAGGGAG GTGATAATTTCTACTTGATCTCGGTAACTTCCCTGGAGAATCTGACAAATTGGCAGGTGGCAGAATCATTAAATCCTAATTTGCCGCCAACCTTGCTGCA TCCTGGTGACCATGTTATATATTGCCAGTGCCCTTCCAGGACTCTGAAAGACAATGGAATTGAGTTTCTCATCACTTATGTCTGGCGGCAAGGAGATGAC CTTCAGACAGTGGCTGACAAGCTAGATGCCTCTGTCAATGATATTGTGCTGGCAAACAACTACATGAATTTCAGCGAGGCAGTAAATCATCCAGTTCTGG TTCCAGTTACTAGATTACCAGTTCTCATGCCGATTAATCCATCTTCACGGCGAAGAAGAGACTCAAAGCTGCATTGGATCATCGTTGTAGTAGCAAGCAC TGTTGCGGCTCTTCTAATCTTATACCTTGTGGCCTTCCTACTTGGTTTTCAGAGCTCATGTCATAAGAAGAAGTTGCTGGTGCGCAAAAACTCCAACCTA GAAACTGATGAGCTGATGCATGCAAAAAAACTCAAGGGAATAGTTAGTTTCGAGCACAAGGCCATACATGACAATCGTCTTCCAGGAATTTCAGGATATC TAAACAAGCCAACCATTTATGATGTCAATTTGATATTGGAATCCACCTTCGATTTACATGACTATTACAGGATTGGAGGATCAATTTATAGAGCCAGCAT CGATGGCCGGGTCTTGGCAGTAAAGAAAATCAACGGGGAAGCAGCTGTGGAGCTGCAGATTCTACAAAAAGTTAACCATGCTAATCTAGTCAAGTTGATG GGAGTTTCGACTGAACTAGAAGGATATTTCTTCTTGGTCTATGAATATGCGCAAAATGGTTCGCTAGACAAGTGGCTATTTCGGAAATCTGCACTATCGA CATCAGGATCTTTGTCCTTCCTCAGTTGGAATAGGAGGCTGCAGATAGCGTTAGATGTAGCAAATGGCTTACAGTACTTGCATGAACATGTGCAACCAAG CATCACTCACAGGGACATCAGGAGCAGTAATATATTACTAGACTCCAGGTTCAGGGCGAAGATAGCAAATTTCTCAATGGCAAAGTCTGCAGTAGACTCT ATAACGACAAAACTTGATGTTTTTGCATTTGGAGTCGTTTTACTGGAGCTTCTTTCAGGGACCAAGGCAATGGTGACAAAAGAAAACGGGGAGATTGTTT TGTTGTCCAAGGAAATCAAGACTGTGCTGGAAGTTGCAGAGAAAAGGGTGAATAGTTTGAGGAATTGGATGGACCCAAACTTGGAGAACTTGTATCCCAT TGACAGAGCCCTGAGCTTGGCAGTGTTGGCAAGGGCCTGCACCCTCGAGGAATTGTCAGCAAGGCCAAGCATGGCGGAAGTTGTCTTTAACTTAACAGTT TTGACACAGTCTCCCACAGATTCACTGGAAGAGGCTTGGCCTAGTAGGCTTGAAGGACAAGAGATTTTGCATATGTGCAGCCCACTCACTGCTCGTTAA
AA sequence Show only first row Show all	>Lus10022487 pacid=23171656 polypeptide=Lus10022487 locus=Lus10022487.g ID=Lus10022487.BGIv1.0 annot-version=v1.0 MNFSRFPRSIAQFSSLKQQIGVVARDPFPNKLTHYLLRAELINAIRLQLRSKESSSLLTLLNNRLSDAFVVTHAIRSVPNHESAISLVEMLKDVPHFQHN QATVHAFATVLAKSGRTCELKSLIQDIQSERYPRVRVNFMNLMYWYAAAGDTKAVLHIWNEYRGSSDRRLCTESYNIVMRIHVQQRNDLEAVNVFFSMID EGAIPNSRTYTVMIEHLVECGKLDSALEVFNVLPRMRVKRTSKQYLVLVDGFVQAKRFDEVKILFEVMKADGKYPCRAMWMALQELKEAGFVEETDLLLE GMFPDERIKSIISRSESSDEDRDGNEEESFEVSGAVDLDIHDVVKLKPWLDSKALADALSTWNPAVIAILESSEFVWTTRLVCKVLRNFKSPDTAWGFFC WVAYQPGFTHDVYTVQRMIAILSRHGKVELVDKLIAKVRNEGMTMPFSTIRLIIEFYGISKNADAALKVFRDDRAQCGHINKYNLMILYSALLRTLTKCK RDSDSIEVLEEMMCCGICPDSQTFSGLIYYFALQGDLKTVQKLFTMVRQNGVGPDAYMFKVLIQAYCKRDRAALALRVFEDMRNSNLMPDPVTKDLLVKS LWKEGKRKEAASVVESCEESNQVLPLVLRGHIWTVSCADLTRPPPITDFSCSTYGEPTHPCDTYVSYHVQSPNFLNLSNISDLFGVSRLLIATASNLASE DSPLVPDQLLLVPIECGCTGNSSFANLTYQIKGGDNFYLISVTSLENLTNWQVAESLNPNLPPTLLHPGDHVIYCQCPSRTLKDNGIEFLITYVWRQGDD LQTVADKLDASVNDIVLANNYMNFSEAVNHPVLVPVTRLPVLMPINPSSRRRRDSKLHWIIVVVASTVAALLILYLVAFLLGFQSSCHKKKLLVRKNSNL ETDELMHAKKLKGIVSFEHKAIHDNRLPGISGYLNKPTIYDVNLILESTFDLHDYYRIGGSIYRASIDGRVLAVKKINGEAAVELQILQKVNHANLVKLM GVSTELEGYFFLVYEYAQNGSLDKWLFRKSALSTSGSLSFLSWNRRLQIALDVANGLQYLHEHVQPSITHRDIRSSNILLDSRFRAKIANFSMAKSAVDS ITTKLDVFAFGVVLLELLSGTKAMVTKENGEIVLLSKEIKTVLEVAEKRVNSLRNWMDPNLENLYPIDRALSLAVLARACTLEELSARPSMAEVVFNLTV LTQSPTDSLEEAWPSRLEGQEILHMCSPLTAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10022487 [exp]	0	1
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	15.4	0.8912
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008664 [exp]	15.7	0.8954
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	15.8	0.8999
AT5G23300		PYRD	pyrimidine d (.1)		Lus10024096 [exp]	31.6	0.8838
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	33.8	0.8799
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	37.1	0.8877
AT1G09800			Pseudouridine synthase family ...		Lus10037366 [exp]	41.2	0.8694
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	44.5	0.8828
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10034395 [exp]	50.3	0.8792
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	54.3	0.8799

Compare expression of checked genes

Lus10022487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.