Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 382 / 8e-125 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 342 / 1e-108 Protein kinase superfamily protein (.1) AT3G21630 202 / 7e-57 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G01840 182 / 2e-49 Protein kinase superfamily protein (.1) AT1G51940 175 / 7e-47 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G79620 172 / 5e-45 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 171 / 8e-45 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G25220 160 / 3e-43 Protein kinase superfamily protein (.1.2) AT2G17220 159 / 8e-43 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G67720 159 / 9e-41 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016794 [exp] 615 / 0 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 433 / 5e-144 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 425 / 7e-141 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 423 / 4e-140 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10032735 [exp] 418 / 9e-138 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 412 / 1e-135 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 340 / 1e-107 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10004504 [exp] 293 / 3e-90 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 280 / 7e-85 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128300 [exp] 676 / 0 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 552 / 0 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 462 / 1e-155 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 462 / 7e-155 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 411 / 1e-135 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 281 / 4e-86 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 276 / 3e-84 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 268 / 7e-81 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 268 / 1e-80 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.007G032300 [exp] 242 / 2e-71 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10022488 pacid=23171710 polypeptide=Lus10022488 locus=Lus10022488.g ID=Lus10022488.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGTTTCTGTTGAATTGTTGGTTTCTATTGTTACTCTGCGCAGTCCCGAAGCTCATCTGCCAGCAGAACTACTCTGGGAATTCAGCCTTGG ATTGTGATGGCAAAGACTCGGCACGTCCATCCCCAGCTTTTCTCTACAGTTGCAATGGTCAGAAGTCCTCCTGCAAAGCTTTTCTGATATACAAATCTCA ACCTCCTTACAACACTCTTGCTAGAATCTCGAAGCTGACATCTTCAGACTGCAGTGAGCTTTCTCGAATCAACAACGTCTCGGATTCAAAAAGGGTATTG CCAACAGGCCAGGAGGTGGTGGTTCCAGTAAGTTGCTCTTGCACTGGCTTATACTATCAGGCAAACTCCTCGTATATAACTCAAGAAACAGATAACTATT TCAAGATTGCAAACGACACTTATGAAGGTCTATCAACTTGCAATATGTTATTACGAGAGAACACATTTGTGGAATCTGATTTACCAGCTGGTCAGAGAAT CCAAGTGCCCCTCAGGTGTGCTTGTCCAACTCGAAATCAGACGATTGAGGGCACCGAGTTCCTGCTCACTTACTTGATCGACTGGGGTGACACAGTTGGC AATATTAGTCAGAGATTCAATGCAAGCATGAAGAATTTATATTATGCAAATGGGTTTGAAGAAGATGATGATCCAACCATTTTTCCCTTCACAACAATTC TTATTCCACTCTCCTCTGAGCCTACAAGTTCTCAGACCATAATTCACCATCCGCCATCTTCTGATACTCCTTCAGTTGTTCCACTTAATCCACCCAAGTG GAAGATAAGCAAGTCAATCAACCGATATCTAGGTTGGATCGTACTTGGGATTTCGTTTGCACTCCTGTCTTTGATCCTAACAGGAGCATTTTTGGTCTAC CATAAGAAAAAAGGCCTTGAAACTCTAAAGGGGAAAAACAGGAAGAAGAAATTGACCTTGCCAGAGGATTTCCTTGATAGCATGTCCACAGTTGATCAAG GGTTGAGAATCTACGACTTGGAGGAGTTAAAGCTAGCAACTGCAGATTTCAGCCCTGACAATCAGTTGAGTGAGCGTGTGTTCAAGGGTGTTATAAATGG ACAAGAAGTAGCTATCAAGAAGATGAGCAGAAATGTTTCAGGTGAAGTGAATTTGCTGAGAAAGATCAACCATTTCAATCTGATAAGCCTTCTTGCTGCT GCATATGAGCACCAGGGTGAATACTACCTGATCTACAAGTACATGGAGAATGGTTCTTTGAAGGATTGGCTACAGAAAGGTAGTTCACATCAAGTCCTAA GTTGGAGCCCTAGGCTTCAAATTGCTTTGGATATTGCTAATGGACTTCACTATCTTCATAACTTTACTGAACCGCCATATGTTCATAAAGATATCAGCAG CAGCAATATTCTGTTAGATGCTGATTTGAGGGCTAAGATTGCCAACTTCAGTCTTGCAAGGTCTGCAGAGGCAGTCTTGTATGCAAGTTCTTCAATCAGG CTTGCAAAGGGAACAAAAGGTTATCTGGCACCTGAGTACTTAGAGTATGGCTTGGTGATTCCTGAGATTGATGTGTATGCATTTGGGGTCGTTTTAACTG AGCTCATCACTCGAAAAGAAGCTGTATTTTGGCAGAATGAAAGAGAGGTGCTACTCTCAGAAGCAATCATGGAAATACTGGATGGAGAAGATTCAGAGTC TGAACTTTGCAACTTCATAGATGCTAGCCTGCATCCAAAGCAAAAAATGAGCCTTGTGCTGAGAATGGTGAGGTTGGTTTTAATGTGCTTGGCTAAAGAA CCTGAAGATCGACCAAGCATGGGTGAAATAGTTTCTTCACTTTCAAAGATACAATTGGAAGTGTATAGATCCGACTTTATGCATTGTAGCAGTTCATAG
AA sequence Show only first row Show all	>Lus10022488 pacid=23171710 polypeptide=Lus10022488 locus=Lus10022488.g ID=Lus10022488.BGIv1.0 annot-version=v1.0 MEQQFLLNCWFLLLLCAVPKLICQQNYSGNSALDCDGKDSARPSPAFLYSCNGQKSSCKAFLIYKSQPPYNTLARISKLTSSDCSELSRINNVSDSKRVL PTGQEVVVPVSCSCTGLYYQANSSYITQETDNYFKIANDTYEGLSTCNMLLRENTFVESDLPAGQRIQVPLRCACPTRNQTIEGTEFLLTYLIDWGDTVG NISQRFNASMKNLYYANGFEEDDDPTIFPFTTILIPLSSEPTSSQTIIHHPPSSDTPSVVPLNPPKWKISKSINRYLGWIVLGISFALLSLILTGAFLVY HKKKGLETLKGKNRKKKLTLPEDFLDSMSTVDQGLRIYDLEELKLATADFSPDNQLSERVFKGVINGQEVAIKKMSRNVSGEVNLLRKINHFNLISLLAA AYEHQGEYYLIYKYMENGSLKDWLQKGSSHQVLSWSPRLQIALDIANGLHYLHNFTEPPYVHKDISSSNILLDADLRAKIANFSLARSAEAVLYASSSIR LAKGTKGYLAPEYLEYGLVIPEIDVYAFGVVLTELITRKEAVFWQNEREVLLSEAIMEILDGEDSESELCNFIDASLHPKQKMSLVLRMVRLVLMCLAKE PEDRPSMGEIVSSLSKIQLEVYRSDFMHCSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	0	1
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	1.0	0.8886
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	6.6	0.8195
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	7.5	0.7751
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	9.5	0.7678
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	9.6	0.7939
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	11.0	0.7615
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	11.0	0.8083
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	16.2	0.7482
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	17.0	0.7509
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	17.7	0.7545

Compare expression of checked genes

Lus10022488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.