Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36850 419 / 3e-144 PQ-loop repeat family protein / transmembrane family protein (.1) AT2G41050 217 / 7e-66 PQ-loop repeat family protein / transmembrane family protein (.1) AT4G20100 118 / 6e-30 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016795 [exp] 598 / 0 AT4G36850 508 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1) Lus10016313 [exp] 50 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031800 [exp] 472 / 5e-165 AT4G36850 507 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.016G023400 [exp] 252 / 7e-79 AT2G41050 396 / 1e-136 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.006G025100 [exp] 140 / 2e-37 AT2G41050 210 / 2e-65 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF04193 [flax] [poplar] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Lus10022491 pacid=23171670 polypeptide=Lus10022491 locus=Lus10022491.g ID=Lus10022491.BGIv1.0 annot-version=v1.0 ATGGGTTACTGCGTGAAAGAAGGGAAGAGTTGCAACGAATGGGTGGAGAGGTACTTCAAGGACTGCCTCTGCAACTTAAAAGACGATTTCTCATTCGGAT TCGGTTTGGTCAGTTTGGTTTGCTGGGGAGTCGCCGAAATCCCACAAATCATAACCAACTTCCGCACTAAATCCAGTCACGGCGTCTCCCTCGCCTTTCT TCTCACTTGGATCGCTGGAGACATTTTCAATTTGGTGGGTTGCCTTCTCGAGCCTGCAACGCTCCCCACTCAGTATTACACAGCTGTGCTGTACACAACA AGCACCGTGGTACTAGTGTTACAGGGCCTCTACTACGATTACATATACAGATGGTTGAAATGCCGCCAGAAGCACCGCAAGGTTGATGAAGAAGAAGAAG ATGAAAAACAACCATTGCGAGAGGCAAAGGCGGTTGATGAATCTGGCATCCCAATCCCTACTAGAGCAGTCCCCGTTCGTAGAGAATTTTACTACGTGTC AGCAAGATCATTAGCGGGGAGTGGTACACCACCATTTAGAAACTACCTTAGAGCGGCCAAAAGCGGGCCTTCAGCTGTGAGGCTTATCGACGATGACTGT TCCTCATCGGAGGATGAATCGTCGGCAGCACTTGCTGCTTTATCATCATCATCGTCACAGCCTAGGCCTATTCCTCGATCCGCTGGTTACGGGACTTTTT TGGCAACATCACTTAACTTGCCATCCCATGGAAATGCTCTGGCACAAGCTTGCATTGGACTTACCGGTAGAAAGCTTTTACAAGAAGGTGGAATGGAGTC CAGTGCAGTGGGTCAATGGCTCGGATGGCTGATGGCTGCCATTTACATGGGTGGCCGAATCCCACAGATATGGCTCAATATCAAAAGAGGAAGCGTGGAG GGATTGAATCCTCTGATGTTCATCTTCGCACTGATTGCAAATCTAACCTATGTTCTGAGCATTATCGTTCGAACGACAGAGTGGGACAAAATCAAAGCCA ACTTGCCATGGTTGCTGGATGCTGCTGTCTGTGTCCTCCTTGATTTATTCATAATAATGCAGTACATCTACTACACATACCTTCGAGACAGAGGTAATGG CCATGAGCGTGACGACTATGAAGGATACCGGGACTACTACAACAATGGAGATCTTGGTCCTGCAACCCTTTCATCCATATATTTATCAAGGAGAACACTT TATCCTGGAATGTTCGTTCGAGCAGCAGAAATAGTTTCTAACCTTCCGTTTGCCAGATCGGTGGTGGTGGATTCTGTGGGTAGAGCATGGGGTATCTGGG TGCTATGGAACTGGCAGCCTTCATCTTGCAGGTTAGCAAATCGACGTTTGGAATGTGGGTTGGTGAATTTGAGGTTCGAGAGACCAGCCTTCACGTGGTT CAGGCACGATTCAAGGTACAACCTCCTACAGGAGCGGTTGGATAGGGAGCTCGCAAATTTGGAGCGGCGGTTGCTGACTACTTCCTATAACTCATTCCGA TCGTAG
AA sequence Show only first row Show all	>Lus10022491 pacid=23171670 polypeptide=Lus10022491 locus=Lus10022491.g ID=Lus10022491.BGIv1.0 annot-version=v1.0 MGYCVKEGKSCNEWVERYFKDCLCNLKDDFSFGFGLVSLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWIAGDIFNLVGCLLEPATLPTQYYTAVLYTT STVVLVLQGLYYDYIYRWLKCRQKHRKVDEEEEDEKQPLREAKAVDESGIPIPTRAVPVRREFYYVSARSLAGSGTPPFRNYLRAAKSGPSAVRLIDDDC SSSEDESSAALAALSSSSSQPRPIPRSAGYGTFLATSLNLPSHGNALAQACIGLTGRKLLQEGGMESSAVGQWLGWLMAAIYMGGRIPQIWLNIKRGSVE GLNPLMFIFALIANLTYVLSIIVRTTEWDKIKANLPWLLDAAVCVLLDLFIIMQYIYYTYLRDRGNGHERDDYEGYRDYYNNGDLGPATLSSIYLSRRTL YPGMFVRAAEIVSNLPFARSVVVDSVGRAWGIWVLWNWQPSSCRLANRRLECGLVNLRFERPAFTWFRHDSRYNLLQERLDRELANLERRLLTTSYNSFR S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	0	1
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	1.0	0.8561
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	7.5	0.7551
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	8.6	0.7897
AT5G64816			unknown protein		Lus10025266 [exp]	9.0	0.7540
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	10.8	0.7685
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	10.9	0.7585
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	11.5	0.7592
AT5G02930			F-box/RNI-like superfamily pro...		Lus10027244 [exp]	16.0	0.6034
AT1G03180			unknown protein		Lus10000654 [exp]	17.3	0.7634
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10018060 [exp]	17.4	0.7238

Compare expression of checked genes

Lus10022491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.