Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23780 235 / 1e-78 RING/U-box superfamily protein (.1) AT1G19310 210 / 9e-69 RING/U-box superfamily protein (.1) AT1G74990 133 / 1e-39 RING/U-box superfamily protein (.1) AT4G27470 102 / 2e-26 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 97 / 7e-25 ATRMA2 RING membrane-anchor 2 (.1) AT4G03510 98 / 2e-24 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G42030 92 / 2e-21 RING/U-box superfamily protein (.1) AT3G58030 92 / 2e-21 RING/U-box superfamily protein (.1.2.3.4) AT2G44410 83 / 2e-18 RING/U-box superfamily protein (.1) AT2G26350 53 / 5e-08 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016796 [exp] 403 / 1e-144 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10016303 [exp] 263 / 3e-89 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 261 / 2e-88 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016255 [exp] 110 / 6e-28 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 110 / 7e-28 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 105 / 3e-26 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 105 / 4e-26 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10033697 [exp] 100 / 5e-26 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 99 / 5e-25 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127900 [exp] 323 / 4e-113 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 288 / 3e-99 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 253 / 1e-85 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 249 / 4e-84 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.001G401600 [exp] 112 / 5e-30 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.006G193600 [exp] 108 / 2e-27 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 106 / 1e-26 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.019G100800 [exp] 99 / 5e-25 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.004G042700 [exp] 97 / 2e-24 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 97 / 2e-24 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022492 pacid=23171773 polypeptide=Lus10022492 locus=Lus10022492.g ID=Lus10022492.BGIv1.0 annot-version=v1.0 ATGGCAAGTGAATTTGGGGAATCCATGAGTTCGCCGACCCCGGAAAGCTCAACCTATTCCGGAAACAATTCAGGGGATGCTGGTGATTTTGAATGCAATA TCTGCTTGGAATTAGCTCAGGACCCAATAGTCACACTTTGTGGTCATCTCTTCTGCTGGCCTTGTCTGTATAGATGGCTTCATCACCACTCCAACTCCCA TGAGTGCCCTGTTTGCAAGGCTCTGATTCAGGAGGAGAAGTTGGTCCCTCTCTATGGCAGAGGTAAATCGAGGGCTGATCCTCGATCAAAATCTTATCCT GGAATCGATGACATCCCCAGAAGGCCTACTGGCCAAAGACCAGACACAGCTCCTCCCCCGAACAACAATGCTTTCCCCAATTACGGGTTTGGGTCGATGG GTGGATTTGTCCCAATGGCCAGCACTAGGATGGGAAACTTCACATTGTCAAGTGCATTTGGTGGTCTATCTCTGTTTCCTTCGTTGTTCAACGTTCAGTT TCATGGTTTCCCTGATGCTCCTGTATATGGAAGTCCATCTGGTTTCCCTTATGGGTTCCATAACTTCCATGGTGGCCATGCCAATTGGTTCCCTCCACCA AGCACTCGAACGCATCAAGCTGACAATGCTTTGAAGAACCTTCTGCTGTTGATTGGTTTCGTTGTAGTCCTCGCGCTTCTATGGTCGTAA
AA sequence Show only first row Show all	>Lus10022492 pacid=23171773 polypeptide=Lus10022492 locus=Lus10022492.g ID=Lus10022492.BGIv1.0 annot-version=v1.0 MASEFGESMSSPTPESSTYSGNNSGDAGDFECNICLELAQDPIVTLCGHLFCWPCLYRWLHHHSNSHECPVCKALIQEEKLVPLYGRGKSRADPRSKSYP GIDDIPRRPTGQRPDTAPPPNNNAFPNYGFGSMGGFVPMASTRMGNFTLSSAFGGLSLFPSLFNVQFHGFPDAPVYGSPSGFPYGFHNFHGGHANWFPPP STRTHQADNALKNLLLLIGFVVVLALLWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	0	1
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	1.0	0.9164
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	1.7	0.8752
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	2.8	0.8781
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	3.0	0.8448
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	3.7	0.8335
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	4.2	0.8488
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	5.5	0.8514
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	8.5	0.8456
AT5G35732			unknown protein		Lus10006404 [exp]	9.8	0.8595
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	10.2	0.8352

Compare expression of checked genes

Lus10022492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.