Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36830 353 / 7e-123 HOS3-1 GNS1/SUR4 membrane protein family (.1) AT1G75000 335 / 9e-116 GNS1/SUR4 membrane protein family (.1) AT3G06470 114 / 5e-30 GNS1/SUR4 membrane protein family (.1) AT3G06460 111 / 1e-28 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016797 [exp] 418 / 3e-149 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10018795 [exp] 149 / 4e-45 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1) Lus10018796 [exp] 146 / 3e-43 AT4G36830 172 / 7e-54 GNS1/SUR4 membrane protein family (.1) Lus10030547 [exp] 95 / 2e-22 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1) Lus10012894 [exp] 78 / 1e-16 AT3G06470 298 / 5e-102 GNS1/SUR4 membrane protein family (.1) Lus10020825 [exp] 78 / 5e-16 AT3G06460 260 / 5e-85 GNS1/SUR4 membrane protein family (.1) Lus10012685 [exp] 77 / 1e-15 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1) Lus10020972 [exp] 40 / 0.0001 AT3G06470 100 / 2e-27 GNS1/SUR4 membrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031500 [exp] 400 / 2e-141 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.014G040500 [exp] 349 / 4e-121 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1) Potri.003G019700 [exp] 134 / 2e-37 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1) Potri.003G019800 [exp] 111 / 1e-28 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [flax] [poplar] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Lus10022493 pacid=23171763 polypeptide=Lus10022493 locus=Lus10022493.g ID=Lus10022493.BGIv1.0 annot-version=v1.0 ATGATGCAGACGTTGCAATTCTACCTATCGGAGCACCCGTCCATCGTGAAATTCCGGTGGAGCCACACCCAATCGTGGGGATCAACGTGGTCCTTCCTGG TAACCTCAATCGCCTTCTACCTAGCCCTCGCCACATTCGTCCACCTCCTCCTCACCCTGTTAGTCCGCCGCCGCCGGCCCATCTCGTTGGGCCCAATCCC AGCCCTCCACAGCCTCACCATGGCCCTAATCTCCGCAACCATCTTCGCTGGCATCCTCCTCTCCGCCGCCTCCGAGATCCGAGAAACCCGGTGGTTCTGG CGCCGCTCCAAGACCCCTCTACAGTGGCTCCTCTGTTTCCCGCTCGGTACCCGCCCTTCCGGTCGGGTATTCTTCTGGTCCTACATGTACTACCTCTCCC GGTTCGTCCACATGTTTCGGACCTTCCTCAGCATCTTCCGATCAAGGAGGCTTGTCTTCTTCCAGCTCTTCAACCACATCATCCTCACCGTTATGTCCTT CCTCTGGCTGGAATTCTCCCAGTCTTTCCAGGTCCTAGGGATTATGCTCGCAACCATGGTTTATTCCGCGGTCTACGGCTACCGATTCTGGACCGCAATC GGGCTGCCTGGAGCATGCTTCCCCTTTGTCCTTAACTGCCAGATTGCCCTCCTCGGAAGTAACCTGGTATGCCACGTCGGTGTATTGATGCTCCATTTCA TGAAAGGTGGGTGTAACGGAATCGGAGCTTGGGTGTTTAATTCGGTGCTAAACAGCGCCATCATGCTCTTGTTCCTCAATTTCTACCTACGGATGCATCT TCTTAACAACAACAGCAAGAACGACAGAATGAAAGAGGAAGAAAAAGAGGTGGAGATTGAAGGCAGCGGAGGTCAGAATCAGATTGCGGCGGCTAGGAAA CATAATTAA
AA sequence Show only first row Show all	>Lus10022493 pacid=23171763 polypeptide=Lus10022493 locus=Lus10022493.g ID=Lus10022493.BGIv1.0 annot-version=v1.0 MMQTLQFYLSEHPSIVKFRWSHTQSWGSTWSFLVTSIAFYLALATFVHLLLTLLVRRRRPISLGPIPALHSLTMALISATIFAGILLSAASEIRETRWFW RRSKTPLQWLLCFPLGTRPSGRVFFWSYMYYLSRFVHMFRTFLSIFRSRRLVFFQLFNHIILTVMSFLWLEFSQSFQVLGIMLATMVYSAVYGYRFWTAI GLPGACFPFVLNCQIALLGSNLVCHVGVLMLHFMKGGCNGIGAWVFNSVLNSAIMLLFLNFYLRMHLLNNNSKNDRMKEEEKEVEIEGSGGQNQIAAARK HN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10022493 [exp]	0	1
AT1G64700			unknown protein		Lus10001663 [exp]	1.4	0.8646
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	3.5	0.8456
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	4.2	0.8469
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	6.2	0.8508
AT4G03010			RNI-like superfamily protein (...		Lus10042681 [exp]	15.1	0.8341
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	22.4	0.7999
AT2G46630			unknown protein		Lus10030217 [exp]	23.2	0.8381
AT2G46630			unknown protein		Lus10005994 [exp]	25.8	0.8321
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	28.7	0.7277
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10026629 [exp]	30.2	0.8054

Compare expression of checked genes

Lus10022493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.