Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35620 525 / 0 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G21750 119 / 5e-29 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 108 / 1e-25 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 96 / 5e-21 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT2G47470 90 / 9e-20 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G54960 84 / 4e-17 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G32920 82 / 1e-16 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 81 / 2e-16 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G52260 73 / 1e-13 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 69 / 3e-12 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016798 [exp] 821 / 0 AT1G35620 546 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Lus10029681 [exp] 117 / 2e-28 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 113 / 4e-27 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 113 / 9e-27 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10010274 [exp] 96 / 1e-21 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 96 / 2e-21 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10037403 [exp] 94 / 3e-20 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10015160 [exp] 84 / 2e-17 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10035360 [exp] 84 / 3e-17 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082400 [exp] 559 / 0 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 550 / 0 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.002G082100 [exp] 121 / 6e-30 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 120 / 1e-29 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 100 / 2e-22 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G198300 [exp] 93 / 1e-20 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 92 / 2e-20 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 87 / 2e-18 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.008G040100 [exp] 79 / 1e-15 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.005G193400 [exp] 72 / 6e-15 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10022494 pacid=23171698 polypeptide=Lus10022494 locus=Lus10022494.g ID=Lus10022494.BGIv1.0 annot-version=v1.0 ATGAGATTATCAATCGTCGTCTGCTTTTCGATATCTACTCTGTTGATTGCCTTTGCAGCGGCTGAACCTGAGAAATTCAAACTCGATGGTAAGGTGTTGG AGCTAGACGAGTCAAACTTCGAACCCGACATTTCCACCTTCGCTCACATCTTCGTCGATTTCTACGCACCTTGGTGTGGCCACTGCAAACGTCTAGCTCC CGAGTTGGATGCGGCAGCTGCGATTCTCTCGAAATCGAAGGACGCCATTGTTATATCAAAAATCAATGCTGAGAAGTACAGACGTCTCGCTGATAAATAC GACGTTGATGGGTATCCAACTCTAAAGGTCTTCATCCATGGGGTTCCCATTGACTATTATGGGCCGAGGAAAGCTGATTTGCTTGTTCGTTACTTGAAGA AATTTGTTGCCCCTGATGTTGCGACCCTTAATTCTGACGCTTCAATAAAGGAATTTGTGGAAGGGGCTGGCACTTTCTTCCCAATATATTTGGGTTTTGG GTTAAATGAGACTGCAATTTCAAACTTAGCTGTCAAGTACAAGAAGAAAGCCTGGTTTGCTGTGGCAAACGATTTCTCAGATGATGTTACGTTTCAGTAT GACTTCGACAAGACTCCAGCATTGGTTTCCATTCATCCTACTTACAATGAGCAGAACATATTTTATGGCCCGTTTGAAGAAGAGTTTCTGGAGACCTTCA TCAAACAAAGTTTTCTACCTCTTGCTGTGCCAATCAACCATGACACACTGAAGATTTTGGCAGATGACCAGAGGAAAATTGTCCTAACCATTGTGGAGGA TGAACTGGAAGAGAAATCACAAAAGTTGATAAAGTTACTGAAGGCTGCAGCATCAGCCAATCGTGACTTAGTATTTGGTTATGTAGGAGTCAATCAATGG GGGGAGTTTACTGATTCATTTGGTGACACTGCCAAAAAGAATCTACCAAGATCAGTTGTTTGGGACGGAAATGAGGAGTATCATGTGGTTCTTGGATCGG AAAGAATAGAGGAGGAAGACCAAGGGTCCCAAATCACTCACTTTCTTGAGGGATACAGAGCAGGGCGAACTGAGATGAGAAAGATGAGTGGTCCATCCTT GATGAGTTTCATCAATTCACTGATTGGAGTGAGACTTGTGTACATATTAGTGTTCCTTGTTGGTGTGTTCATGCTGATCCAGAACATCTGCAAAGAGGAG CCTCTTCGGGTTGGCACCCGTGACCAGATGGACGGTACTACAGAAGCATCTAAAGCAGAAAGCACACGAGGGGACAAGGAAGACTAA
AA sequence Show only first row Show all	>Lus10022494 pacid=23171698 polypeptide=Lus10022494 locus=Lus10022494.g ID=Lus10022494.BGIv1.0 annot-version=v1.0 MRLSIVVCFSISTLLIAFAAAEPEKFKLDGKVLELDESNFEPDISTFAHIFVDFYAPWCGHCKRLAPELDAAAAILSKSKDAIVISKINAEKYRRLADKY DVDGYPTLKVFIHGVPIDYYGPRKADLLVRYLKKFVAPDVATLNSDASIKEFVEGAGTFFPIYLGFGLNETAISNLAVKYKKKAWFAVANDFSDDVTFQY DFDKTPALVSIHPTYNEQNIFYGPFEEEFLETFIKQSFLPLAVPINHDTLKILADDQRKIVLTIVEDELEEKSQKLIKLLKAAASANRDLVFGYVGVNQW GEFTDSFGDTAKKNLPRSVVWDGNEEYHVVLGSERIEEEDQGSQITHFLEGYRAGRTEMRKMSGPSLMSFINSLIGVRLVYILVFLVGVFMLIQNICKEE PLRVGTRDQMDGTTEASKAESTRGDKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	0	1
AT5G03460			unknown protein		Lus10023922 [exp]	1.0	0.9169
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	3.3	0.8686
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	4.6	0.8980
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	4.9	0.8778
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10018238 [exp]	6.0	0.8713
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	6.7	0.8807
AT1G65020			unknown protein		Lus10024543 [exp]	6.9	0.8828
AT4G18230			unknown protein		Lus10032224 [exp]	7.2	0.8424
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	7.7	0.9041
AT5G05670			signal recognition particle bi...		Lus10030896 [exp]	12.0	0.8643

Compare expression of checked genes

Lus10022494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.