Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78850 360 / 3e-121 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 359 / 4e-121 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78830 349 / 5e-117 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 332 / 4e-110 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 322 / 1e-106 Curculin-like (mannose-binding) lectin family protein (.1) AT4G32300 103 / 1e-23 SD2-5 S-domain-2 5 (.1) AT3G51710 93 / 2e-20 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 88 / 2e-18 S-locus lectin protein kinase family protein (.1) AT1G65790 83 / 1e-16 ARK1 receptor kinase 1 (.1) AT4G21380 82 / 3e-16 ARK3 receptor kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000579 [exp] 524 / 0 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 100 / 4e-22 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10024343 [exp] 97 / 4e-21 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 92 / 2e-19 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10032944 [exp] 91 / 2e-19 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 90 / 6e-19 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 89 / 2e-18 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10031805 [exp] 84 / 7e-17 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10018405 [exp] 81 / 4e-16 AT4G21380 952 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110500 [exp] 467 / 1e-163 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 464 / 2e-162 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 454 / 1e-158 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 446 / 3e-155 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 444 / 1e-154 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 437 / 2e-151 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 377 / 5e-128 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 298 / 6e-99 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 120 / 6e-29 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G132500 [exp] 101 / 4e-23 AT3G51710 464 / 2e-161 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10022495 pacid=23171787 polypeptide=Lus10022495 locus=Lus10022495.g ID=Lus10022495.BGIv1.0 annot-version=v1.0 ATGGCGCCATTATTACTCACTTTCTGCTTCTTCTTCCTTTCCTCTTCAATGATCTCCCACGCTACAGTACCTCCATCCTCCCAATTCACCCACGTGAACT CGGGCGAATTCGGCCCCTACATAGTCGAATACGACGCCAGTTACCGTATCATCCCTATCGCCAGGACCCCTTTCCAGCTCTTCTTCTACAACACCACTCC CGGCGAGTACACTCTCGCCGTCCGTATGGGCCTCCAGCGCTCGGAGGCCACACGCCGTTTTGTTTGGGAGGCCAACCGTGGAAGCCCCGTCGGCGAGAAC GCCACCTTCTCCTTCGGGTCAGATGGAAACCTCCTACTTGCCCAATCCGACGGCAGGGTCGCCTGGCAATCCAACACCGCAGGGAAAGGAGTCGTCCGAT TTGAGATGCTCCCGTCGGGGAACATGGTTCTCTACGATTCCAAAGGGAAATCCTTGTGGGAGAGCTTCGATTTCGCCACTGATACTCTGTTGGTGGGTCA GTCTCTTCGGGTCGGAGCTACCACCAGATTGGTGAGCCGGGCCTCCGAGAAGGAGAATAGAAATGGGCCTTACAGTCTGGTCATGGAGCCCAACCGGTTG GTTTTGTACTACACTACCGAAAACACCCCTAAACCTTATCCTTACTACAGTTTTCTTGACATCCAACCATCCTCAGCCACACTTGTGAATGTGACGTTGA ATCCTTACTTGGGGTTCGATTACCAGGTGAGGAACGGATACAATGGGACTGATGGGAGCTTCAAGAATCCAAGGTTTAACGCTACGCTTTCCTACCTCCG CCTGGGAATCGATGGAAACGTTGGAATCTTTACTTATATAATTTTGTTCGAGCCATCTGGGTACGAGGTGCACTATTGGGAGAAGTCGTTAACGTTTTTC TCAGAGGATGATTGGTGGGCGCAGGAAACTAAATGCCAGTTGCCAGGTCGGTGCGGCGACTTTGGAGTCTGTGAGAACAGTCAGTGCGTCGGGTGCCCGA CGCCCAGTGGATCGTTGTCGGGTTGGAGCGAGGATTGTCGACCCCCGAAGCTGAGTTCTTGCGAGTTTCGGAGGTATTATGAGATGAGAGGAATTGAGCA TTTCATGGTGAAGTACTCGAGAGGAGATGGGCCGGTGAAGAAGGAATGGTGTGAAAGAAAGTGCAGTAAGGATTGCAAGTGTTTGGGATACTTTTACAAT ACAGATTCCTCGCGCTGTTGGATTGCTTATGAGCTTAGGACGATGACTCGAGTTGCTAACTCCACTCATTTGGCTTACATTAAAATTTAG
AA sequence Show only first row Show all	>Lus10022495 pacid=23171787 polypeptide=Lus10022495 locus=Lus10022495.g ID=Lus10022495.BGIv1.0 annot-version=v1.0 MAPLLLTFCFFFLSSSMISHATVPPSSQFTHVNSGEFGPYIVEYDASYRIIPIARTPFQLFFYNTTPGEYTLAVRMGLQRSEATRRFVWEANRGSPVGEN ATFSFGSDGNLLLAQSDGRVAWQSNTAGKGVVRFEMLPSGNMVLYDSKGKSLWESFDFATDTLLVGQSLRVGATTRLVSRASEKENRNGPYSLVMEPNRL VLYYTTENTPKPYPYYSFLDIQPSSATLVNVTLNPYLGFDYQVRNGYNGTDGSFKNPRFNATLSYLRLGIDGNVGIFTYIILFEPSGYEVHYWEKSLTFF SEDDWWAQETKCQLPGRCGDFGVCENSQCVGCPTPSGSLSGWSEDCRPPKLSSCEFRRYYEMRGIEHFMVKYSRGDGPVKKEWCERKCSKDCKCLGYFYN TDSSRCWIAYELRTMTRVANSTHLAYIKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	0	1
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	3.3	0.9466
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	4.6	0.9206
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	6.6	0.9323
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	8.1	0.9339
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	11.5	0.8969
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	12.2	0.9359
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	18.4	0.9298
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	19.9	0.9079
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	20.5	0.9219
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	21.4	0.8498

Compare expression of checked genes

Lus10022495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.