Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23790 367 / 2e-126 Protein of unknown function (DUF607) (.1) AT4G36820 329 / 8e-112 Protein of unknown function (DUF607) (.1) AT5G66650 294 / 4e-98 Protein of unknown function (DUF607) (.1) AT5G42610 239 / 6e-77 Protein of unknown function (DUF607) (.1) AT1G57610 175 / 3e-52 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) AT1G09575 166 / 6e-49 Protein of unknown function (DUF607) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016799 [exp] 654 / 0 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 412 / 9e-145 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 407 / 1e-142 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 258 / 6e-84 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 252 / 2e-81 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 194 / 8e-59 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 135 / 3e-37 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 117 / 7e-33 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031400 [exp] 374 / 3e-129 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 368 / 4e-127 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 273 / 9e-90 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 272 / 3e-89 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 171 / 2e-50 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 171 / 4e-50 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10022496 pacid=23171691 polypeptide=Lus10022496 locus=Lus10022496.g ID=Lus10022496.BGIv1.0 annot-version=v1.0 ATGGCGTTCAAAAAGACCCTAGCTGAGCGCCTCTTCAACATCTCCAGAATTTCCCCAAACCAATCCCTAGCCAATTGTCGGATCTCATCTTCCGCTGTTA GGAGTCGGATCCCTCAGAGCAAGGCCAACATTGCTCCTGATCCTGGAGATAATAATGCTGTTTTCCGCCGATTGTTCCACAAGAAGGCAGCAGCGGCCAC GGCCACGGCAGAGCATCTTCCTAAGCCTTTCCAATTCGGAGGAAACTTAATGGAGAAACTGAGGTCGTTCGACATTGTCAGGGACCGGGTCCGATTGGAC GGCCTCTTCCCTCCGCCAGTCGAGAAATCGGATTCGTCGACGGGAAAGCACGAGCTGACGATCGACGACGCGAGGAAGTTACTCCGGGTAGCGCGATTGG AAATGGTGAAATCGAGGCTTGGAGACACGGAAAGAAACTGGATGCCGCGCTCGGAGTTCGTTCGGATCTGCGAAGAAGTTTGTTCAGATACGGAGGAAGG GAACCGGGTCGCCCAGACGCTTGACGAGTCCGGAACTGTAATCGTCTTGGGAGATGCAGTATTCCTCAAACCAAAGCAGGTTGCGAAAGCGATAGGAGGT ATAATACCATTCCCAGCAACGAACCCAAACGACCCAAGAAAGAAGGAGCTGGAACAGTTGGAGCAGCGGAAAGCATTGATCGACGAAAAGGCAAGGAGGC AGGTGAGGCGAGAGCTGTGGGGTGGGCTTGGCTACCTAGTCATCCAAACCGCAGCCTTCATGAGGCTCACATTCTGGGAACTGTCTTGGGACGTCATGGA ACCCATTTGCTTCTACGTCACCTCCATTTATGTAATGGCTGGCTACGCTTTCTTCCTCAGGACCTCCAGAGAGCCAACTTTTGAAGGCTTCTTCCAAAGC CGGTTCCTCGCGAAGCAGAGAAGGCTAATCAAGGCTCATAAGTTTGATGTCGAGAGGTATAATGAGCTACGGAAGGTCTGTTACCCGTTTCGAGATCAGG AGGTGGAGGAGGAGGAGCAAGAGCTTTCGTTCTCGAGTATTCATTCTGAATTCGATGGCAGCAAGTTGGGGAAGATTTGTTGA
AA sequence Show only first row Show all	>Lus10022496 pacid=23171691 polypeptide=Lus10022496 locus=Lus10022496.g ID=Lus10022496.BGIv1.0 annot-version=v1.0 MAFKKTLAERLFNISRISPNQSLANCRISSSAVRSRIPQSKANIAPDPGDNNAVFRRLFHKKAAAATATAEHLPKPFQFGGNLMEKLRSFDIVRDRVRLD GLFPPPVEKSDSSTGKHELTIDDARKLLRVARLEMVKSRLGDTERNWMPRSEFVRICEEVCSDTEEGNRVAQTLDESGTVIVLGDAVFLKPKQVAKAIGG IIPFPATNPNDPRKKELEQLEQRKALIDEKARRQVRRELWGGLGYLVIQTAAFMRLTFWELSWDVMEPICFYVTSIYVMAGYAFFLRTSREPTFEGFFQS RFLAKQRRLIKAHKFDVERYNELRKVCYPFRDQEVEEEEQELSFSSIHSEFDGSKLGKIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	0	1
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	1.4	0.9709
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	4.2	0.9677
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	5.3	0.9367
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	6.0	0.9663
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	6.5	0.9586
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	7.2	0.9619
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	7.5	0.9443
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	7.9	0.9363
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	8.2	0.9466
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10041731 [exp]	9.0	0.9373

Compare expression of checked genes

Lus10022496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.