Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65120 164 / 8e-48 unknown protein AT5G10110 129 / 9e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016802 [exp] 676 / 0 AT5G65120 160 / 2e-46 unknown protein Lus10000581 [exp] 129 / 5e-37 AT5G65120 88 / 3e-22 unknown protein Lus10029030 [exp] 50 / 2e-06 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10019664 [exp] 47 / 3e-06 ND 36 / 0.003 Lus10034236 [exp] 49 / 4e-06 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090500 [exp] 272 / 3e-89 AT5G65120 176 / 2e-52 unknown protein Potri.005G077400 [exp] 245 / 9e-79 AT5G10110 150 / 2e-42 unknown protein Potri.019G058200 [exp] 42 / 0.0007 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022498 pacid=23171770 polypeptide=Lus10022498 locus=Lus10022498.g ID=Lus10022498.BGIv1.0 annot-version=v1.0 ATGAGTGGGAATAATTCCGCAGACGAGGTTGCTAAGACGCGTCCGGCCCTAGGGGATCTGACAAATCAGCCGCTTAAGAGAGGGTTTTCCTCAATTTACA GCGATTCAGAGCTGAGATGTGTTGATGGTGCTGAAGATTCAGGTTTCGCGAAGCAGGTGTGTTTAGGAGTGGAGAATTTGGTCAGAGAGAGATGCCAATC TGGGTTTAAGAATAGTAGTGATGGTACTGGGAAAGGTATTCTTGCTAAGAAAGATGGGAAAAATCAGAGTTCAGATCCTGCTGCTTGTCAAATTGATTTG GAAGGAGTTGGAAATGTATTCTCTTTGCTCTCAGATGGACCCAAAGACGAATCAAAAGTCAAAGAAGCATCCAATCCCTTAGATGGCGGCACTGATGTAA TTGACAAAAGTACGGGAGATGCATCGGGAGATAGCTGTGGATCTAGCAGAACTGATAGTGACGATGAAGTAAGAATAACGTACAATGTGTCACTGAGCCA ACAATCCATAGGTGAAATGTTTGGTAGTAGTCAAGGGTTGACTGATGAGAGCAAAGATCCCGGAGTTGATGTGTTTGGTGGTGAAACTACTGGGCTTGCG GAGGGTAGGATGAAATCCTTCCAGTTGGATAGATGCACAAGACTTGAAGACGGTGATGGTTGTTCTAATAAAGACTTGGGTGCTGACTTCCTCAAAACAT GTTCTTGTTCATTTTGCCTGACGGCTGCTTTTATGTGGTCTGACCTCCACTATCAAGACGTCAAGGGTCGATTATCTTCATTGAAGAAGAGCCAGAAAGA AGCTAGCATATTGGTGAACAAATTTTCCAGGGGAAGGCAGGCTGAAGTTCATGAACAAGGAACTTCCAGCAAACCACTTCAGTTGGAAACTGACTTGACA TGTCAGTGGAGATCTCTCTTTCAGCACATGGAAAATATATTTGCTCATGAAAGCAACCAGATTGAAAAGAACTTCTTTGCCCTGAAAGATTTGAGAGAGA GTTGCAAGACAGATCTAGTAAAGACCACCAGGGTGCCTCCAGAAAACTGA
AA sequence Show only first row Show all	>Lus10022498 pacid=23171770 polypeptide=Lus10022498 locus=Lus10022498.g ID=Lus10022498.BGIv1.0 annot-version=v1.0 MSGNNSADEVAKTRPALGDLTNQPLKRGFSSIYSDSELRCVDGAEDSGFAKQVCLGVENLVRERCQSGFKNSSDGTGKGILAKKDGKNQSSDPAACQIDL EGVGNVFSLLSDGPKDESKVKEASNPLDGGTDVIDKSTGDASGDSCGSSRTDSDDEVRITYNVSLSQQSIGEMFGSSQGLTDESKDPGVDVFGGETTGLA EGRMKSFQLDRCTRLEDGDGCSNKDLGADFLKTCSCSFCLTAAFMWSDLHYQDVKGRLSSLKKSQKEASILVNKFSRGRQAEVHEQGTSSKPLQLETDLT CQWRSLFQHMENIFAHESNQIEKNFFALKDLRESCKTDLVKTTRVPPEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10110			unknown protein		Lus10022498 [exp]	0	1
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10035503 [exp]	2.8	0.8426
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	4.1	0.8627
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	4.4	0.8078
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	4.5	0.8525
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	4.5	0.8523
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	4.9	0.8513
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	8.9	0.8306
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	9.2	0.8536
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	11.0	0.8043
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	11.2	0.8080

Compare expression of checked genes

Lus10022498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.