Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 465 / 2e-164 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 444 / 2e-156 Terpenoid synthases superfamily protein (.1) AT2G18640 398 / 3e-138 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT2G23800 391 / 2e-135 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 384 / 7e-133 Terpenoid synthases superfamily protein (.1) AT3G14550 379 / 5e-131 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14530 379 / 9e-131 Terpenoid synthases superfamily protein (.1) AT3G29430 367 / 3e-126 Terpenoid synthases superfamily protein (.1) AT3G32040 365 / 2e-125 Terpenoid synthases superfamily protein (.1) AT3G14510 344 / 3e-118 Polyprenyl synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016803 [exp] 674 / 0 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 407 / 8e-142 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 390 / 8e-134 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 386 / 2e-133 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 364 / 7e-125 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 352 / 5e-120 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 344 / 8e-117 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 288 / 4e-97 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10025096 [exp] 218 / 2e-68 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127100 [exp] 542 / 0 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 525 / 0 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 414 / 9e-145 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 398 / 2e-138 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 387 / 4e-134 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 242 / 2e-77 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 241 / 4e-77 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 130 / 8e-34 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 101 / 3e-24 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G101301 [exp] 94 / 4e-21 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10022499 pacid=23171712 polypeptide=Lus10022499 locus=Lus10022499.g ID=Lus10022499.BGIv1.0 annot-version=v1.0 ATGTCACCAATGATGAGTTGCTCCTCCTCCTCCTCTGTTCATTTGAGTTGCTGGGTTCATACATCCTCAATCTTCCTCACCAGATCTAGATCCAAATCTC AATCCCTAACTCCTCCTCTCAAAACCCTCTCCATCCCCCTCCGACGCCACCGCCGCATCTCCACCGCATCCGCCGTTCTCACAAGGGAAGACAAGGAATC ATCATCATCCCTCCATGACTCCGACTCAAATCCCAATCCCACCTTCGATTTCAAGTCCTACATGCTCCGCAAGGCCAATTCCGTCAACCAGGCCCTCGAC GCAGCCGTCCCACTCAAGGAGCCCGCTAAAATCCACGACTCCATGCGCTACTCCCTCCTGGCCGGCGGCAAGCGTGTCCGCCCTGTGCTCTGCCTCGCCG CCTGCGAATTGGTCGGCGGTACAGAGCCCATGGCTATGCCCGCAGCCTGCGCCGTGGAGATGATACACACCATGTCCTTAATCCACGACGATCTCCCCTG TATGGACAACGACGACCTCCGCCGAGGTAAGCCGACCAACCATATAGTGTACGGGGAGAGCGTGGCCGTTTTGGCTGGCGACGCGCTGCTTGCGTTCGCC TTCGAGCATATAGCTGTGGCGACGGTGAACGTGTCCCCGGGGAGGATAGTGAGGGCGATTGGGGAGCTGGCGAAAGTTATAGGAGGGGGAGGTGTGGTGG CGGGGCAGGTGGTGGACATATGCTCGGAAGGGAATTCAGAGGTTGGATTGGAAGAGCTGGAGTTTATCCACGTCCACAAGACGGCGAAGCTACTGGAAGG GTCGGTGGTGCTGGGGGCGATACTCGGTGGGGGTACGGACGACGAAGTGGAGAGGCTTAGGAGATACGCTAGGGGGATTGGGCTGTTGTTTCAAGTGGTT GATGACATACTTGATGTGACGAAATCGTCTCAGGAATTGGGGAAGACTGCTGGTAAGGATTTGGTGGCGGATAAGGTGACTTACCCGAAGCTGATGGGAA TTGATAAATCCAAGGAGTTTGCTGAGAAGTTGAATCAGGAAGCTAAGGAGCAGCTTGTTGGGTTTGATCCGAGCAAAGCTGCTCCTTTGATTGCTTTAGC TAATTACATTGCTTACAGGCAGAATTAA
AA sequence Show only first row Show all	>Lus10022499 pacid=23171712 polypeptide=Lus10022499 locus=Lus10022499.g ID=Lus10022499.BGIv1.0 annot-version=v1.0 MSPMMSCSSSSSVHLSCWVHTSSIFLTRSRSKSQSLTPPLKTLSIPLRRHRRISTASAVLTREDKESSSSLHDSDSNPNPTFDFKSYMLRKANSVNQALD AAVPLKEPAKIHDSMRYSLLAGGKRVRPVLCLAACELVGGTEPMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVYGESVAVLAGDALLAFA FEHIAVATVNVSPGRIVRAIGELAKVIGGGGVVAGQVVDICSEGNSEVGLEELEFIHVHKTAKLLEGSVVLGAILGGGTDDEVERLRRYARGIGLLFQVV DDILDVTKSSQELGKTAGKDLVADKVTYPKLMGIDKSKEFAEKLNQEAKEQLVGFDPSKAAPLIALANYIAYRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10016803 [exp]	1.0	0.9353
AT2G43630			unknown protein		Lus10005311 [exp]	3.0	0.8818
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	4.2	0.8353
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018728 [exp]	4.5	0.8737
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	4.7	0.9043
AT3G25580			Thioredoxin superfamily protei...		Lus10026602 [exp]	5.7	0.8167
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	7.5	0.8533
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	16.6	0.7838
AT4G28660		PSB28	photosystem II reaction center...		Lus10022867 [exp]	18.8	0.8677
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	19.2	0.8366

Compare expression of checked genes

Lus10022499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.