Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65160 592 / 0 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 549 / 0 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 347 / 4e-113 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 311 / 3e-97 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 292 / 5e-90 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G53300 277 / 2e-84 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G14950 269 / 4e-81 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT5G12430 100 / 1e-21 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 77 / 2e-14 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G30480 69 / 9e-13 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016804 [exp] 990 / 0 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 286 / 2e-87 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 277 / 2e-84 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10031418 [exp] 66 / 3e-11 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10019041 [exp] 66 / 6e-11 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035117 [exp] 63 / 9e-11 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 64 / 2e-10 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022603 [exp] 61 / 1e-09 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10031195 [exp] 59 / 4e-09 AT1G56090 260 / 8e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076800 [exp] 653 / 0 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 643 / 0 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 442 / 5e-149 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 431 / 3e-143 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 306 / 2e-95 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.001G392601 [exp] 137 / 3e-35 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.001G255000 [exp] 88 / 8e-18 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.009G050200 [exp] 87 / 2e-17 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.018G100700 [exp] 68 / 2e-12 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G014100 [exp] 69 / 3e-12 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10022500 pacid=23171745 polypeptide=Lus10022500 locus=Lus10022500.g ID=Lus10022500.BGIv1.0 annot-version=v1.0 ATGGCGGATACGGAGGATCCTTCACCTGATAAGAAATCAGGATGCGGCCTATTAAGCGCTGTATTCGGGAAAAAGGGCACTGGAGGAATGTGGGCAAGGA GAAGTTCATCAACCGGCTCAATCCCATCCATTGTCCCCGCCGCTGAGACCACCGGCAAACCACCTCACAATTTAGGCAAGTCACCTAGCTTCACCAAGAG AAGAAAAAACTCTGATGAATCTGCTGCAGGTATCCACCAGAAATCATCCATCCACCCCAAGAATATCCCTCCTCCTTCGTATCATCATCCTCATCATCAA ATTGTCAAGGAACAGCCTGCAGTAGTAGCATCCAGAACAACAAACAAGGTTATTAACGTGAATCATAATATTAATAATAATGCTAGTCATAATAAGAAAG TTCCCAAAGAAGCAATCAGCATATCCGGTGAGCTGGAGAGCATGATCAATGATCACCAAAGGAGCAACAACAGCCATTTGGTACGTGCTTCATCCAGCAA TGTTATGCTTTATGGTAATCTCGGGAACTTGAGGCAGCAAGGAGAATACAACAACAATAACAACAACACCAGCAATACTCGGTATCATCCTCCTCCTCCT AATAGCGTGATGAAGAAACAGAGTGATTACCAGAGCCAGGAGGCACCCCCGACTTCTCTATGCAGGGCTTTGTCGACTAGAATGGATCCCGAGCAGCTTA AGATGATGGGTAACGAGGATTATAAGAACGGTAATTTCGCTGAGGCTTTGGCTCTATACGAAGCCGCCATTGCCATCGACCCCAACAAGGCTTCCTACCG GAGCAACAAAAGCGCTGCGTTAACTGCTCTCGGTAGGATCCTTGATGCTGTTTTTGAGTGTAGAGAGGCGATCCGGATTGAACCCACTTACCATCGCGCT CATCATCGCCTCGCTAACTTGTACCTCAGGTTAGGAGACGTGGAGAAATCGATCTATCATTACAAACACGCAGGGCCGGAGGCGGATCACGTTGACATTT CCAAAGCCAAAGCTCTCCAACTTCACCTCAACAAATGTACAGAGGCCAGGAGGATGAGAGATTGGAATACTCTCATCAAAGAAACACAAGCTACCATTTC AGGTGGAGCAGATTCAGCGCCCCAAATATACGCATTGCAAGCTGAGGCGCTGTTGAAGCACAATAAACACCAAGAAGCCAACGACGCGATGAACAAAAGT TCCAATTTCGACGCAGATGCTTGTACCAAATTCTTCGGCCCCATTGCCAGTGCCAGTATCTTAGCTGTCCGAGCTCAGGTAGACATGGCAATGGGAAGGT TCGAGGAGGCGTTGGCGGCAGCACAAAGAGCGACGAGGCTAGATGCAAACAACAGGGAAGGCAATATGGCGATGAGAAAAGCAAGAGCAGTAGGAGCAGC TCGAGCGAAAGGGAATGAGCTTTTCAAGTCTGGCAAGTTCCAAGAGGCATCAGCAGCGTATGGAGAAGGACTGGAGCACGATCCTCACAACTCTGTATTG CTCTGCAACCGAGCAGCCTGTCGTTCCAAGCTCGGCCACTTGGACAAGGCCGTCGAGGACTGCACATCTGCTCTCAACCTCCGCCCTGGATATGCCAAAG CTAGGCTAAGAAGAGCTGACTGCTACTCCAAGTTGGAGAAATGGGAAGCTTCAATACAAGACTACGAGTTGCTGCACAAAATATCACCTGAGGATGAAGA GGTCAAGCAGGGGTTGTTGGACGCCAAGTCAAGAATGAGGAAGCAAAGAGGAGGTGACCACTGA
AA sequence Show only first row Show all	>Lus10022500 pacid=23171745 polypeptide=Lus10022500 locus=Lus10022500.g ID=Lus10022500.BGIv1.0 annot-version=v1.0 MADTEDPSPDKKSGCGLLSAVFGKKGTGGMWARRSSSTGSIPSIVPAAETTGKPPHNLGKSPSFTKRRKNSDESAAGIHQKSSIHPKNIPPPSYHHPHHQ IVKEQPAVVASRTTNKVINVNHNINNNASHNKKVPKEAISISGELESMINDHQRSNNSHLVRASSSNVMLYGNLGNLRQQGEYNNNNNNTSNTRYHPPPP NSVMKKQSDYQSQEAPPTSLCRALSTRMDPEQLKMMGNEDYKNGNFAEALALYEAAIAIDPNKASYRSNKSAALTALGRILDAVFECREAIRIEPTYHRA HHRLANLYLRLGDVEKSIYHYKHAGPEADHVDISKAKALQLHLNKCTEARRMRDWNTLIKETQATISGGADSAPQIYALQAEALLKHNKHQEANDAMNKS SNFDADACTKFFGPIASASILAVRAQVDMAMGRFEEALAAAQRATRLDANNREGNMAMRKARAVGAARAKGNELFKSGKFQEASAAYGEGLEHDPHNSVL LCNRAACRSKLGHLDKAVEDCTSALNLRPGYAKARLRRADCYSKLEKWEASIQDYELLHKISPEDEEVKQGLLDAKSRMRKQRGGDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10022500 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	3.2	0.8405
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	11.4	0.7742
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	12.4	0.7819
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	14.0	0.7876
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	19.3	0.7731
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	19.8	0.7969
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	21.5	0.7941
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	22.2	0.7766
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	28.9	0.7507
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	30.8	0.7726

Compare expression of checked genes

Lus10022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.