Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 265 / 9e-86 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 262 / 2e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT5G61390 260 / 7e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016807 [exp] 585 / 0 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019078 [exp] 267 / 2e-86 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10015719 [exp] 266 / 4e-86 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000567 [exp] 253 / 1e-80 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079100 [exp] 378 / 6e-133 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G088500 [exp] 323 / 7e-112 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.015G062000 [exp] 264 / 4e-85 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10022503 pacid=23171692 polypeptide=Lus10022503 locus=Lus10022503.g ID=Lus10022503.BGIv1.0 annot-version=v1.0 ATGGAAGAGCACAACATTACATCGTCAGGTCCCCAGATTGTTTTCTTCGACCTCGAAACAACCGTTCCCAACCGATCCGCAGGCAGGTTCCACGTGCTGG AGTTTGGGGCCATCGTGGTTTGCCCCAGGAAGCTGGTGGAGCTGTGGAGCTACACCACGCTCATACGCCCCATGGATCTGACCGTGGTGTCGGTACGATC AGGCCGGCCGGAGGGAATAACCAGGGCGGCGGTGGCAGGGGCGCCGACGTTCGAGGAAGTTGCGGACAGGATTTATGAGATCCTGAATGGGAGGATATGG GCAGGGCATAATATTCATAGGTTTGACATGGTTCGAATCAAGGAGGCGTTCGCAGAGATCGGACGGCCGGCTCCTATCCCCGTCGGGAGCATTGATTCGT TGGGAGTGCTTACCCAGAGATTTGGAAGACGTGCCGGCAACATGAAGATGGCAACGTTGGCGACATACTTTGGGCTAGGCCAACAAAAGCACAGAAGCCT TGATGATGTCCGGATGAACTTGGAAGTGCTGAAGCATTGTGCAACCGTGCTTTTCTTGGAATCAAGCCTTCCAGCAGGATTGTTGAGGAATGGTAACGGA TCAGAATGGCAGCATCAACATCGGACGGGATGTTCGACGGTTGTAACGCGGAGTAGAAGCGTTCAGATTTGTAAGGACATTACCGTACCTACACCTACAA CAAGAAAATCGCCACCAACTGCGACTGCAACAAGTCTGTCTTACCAAAGGCCTCTTCCCTATGCCAGGGGAAGCTGCAGCAGCTTCGGCAAGATGACAGA AGGGATGAAGAGCTTGTTGTGTAGAGCACGAGAGACAAGATCCATCACCAGATTACTCAAGCATTCCCAATCATTGCTCCGGTGA
AA sequence Show only first row Show all	>Lus10022503 pacid=23171692 polypeptide=Lus10022503 locus=Lus10022503.g ID=Lus10022503.BGIv1.0 annot-version=v1.0 MEEHNITSSGPQIVFFDLETTVPNRSAGRFHVLEFGAIVVCPRKLVELWSYTTLIRPMDLTVVSVRSGRPEGITRAAVAGAPTFEEVADRIYEILNGRIW AGHNIHRFDMVRIKEAFAEIGRPAPIPVGSIDSLGVLTQRFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPAGLLRNGNG SEWQHQHRTGCSTVVTRSRSVQICKDITVPTPTTRKSPPTATATSLSYQRPLPYARGSCSSFGKMTEGMKSLLCRARETRSITRLLKHSQSLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39810			Polynucleotidyl transferase, r...		Lus10022503 [exp]	0	1
AT4G39810			Polynucleotidyl transferase, r...		Lus10016807 [exp]	10.7	0.8348
AT4G16400			unknown protein		Lus10039068 [exp]	11.0	0.8510
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10005646 [exp]	15.2	0.6724
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	16.1	0.8493
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	22.6	0.8407
AT5G46530			AWPM-19-like family protein (....		Lus10025374 [exp]	23.1	0.8163
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	25.6	0.8375
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	27.1	0.8205
AT3G15800			Glycosyl hydrolase superfamily...		Lus10023120 [exp]	36.2	0.8089
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	42.2	0.8143

Compare expression of checked genes

Lus10022503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.