Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77950 54 / 6e-08 MADS AGL67 AGAMOUS-like 67 (.1.2) AT1G26310 45 / 3e-05 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G30260 43 / 0.0001 MADS AGL79 AGAMOUS-like 79 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016809 [exp] 578 / 0 AT1G22130 73 / 1e-14 AGAMOUS-like 104 (.1) Lus10016810 [exp] 74 / 1e-14 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10022506 [exp] 63 / 1e-10 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10024823 [exp] 47 / 8e-06 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092300 [exp] 57 / 8e-09 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G087500 [exp] 52 / 2e-07 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.004G115400 [exp] 49 / 1e-06 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.007G120002 [exp] 44 / 8e-06 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10022505 pacid=23171779 polypeptide=Lus10022505 locus=Lus10022505.g ID=Lus10022505.BGIv1.0 annot-version=v1.0 ATGCATAATTCAGAGGGCGGAGGTAGAGCATCGTCATTGTCGAAGAGGAGGAGCAATTTGATAAGGAAGGCACAGGAAATCTGTTTCTTTGGCGATGCTG ATGTTGCCTTCGTCGCCTTTTCACCTTGCGGCCGCCTTACCAAGTTTAGTAGCAAAAAAAGAATTGAGGATATCCTACAGAAGTATGTTGATTTACCAGC TGGTCAAAGATACAAGATCCATCATTTGGAGCTGCAGATCAAGAAAGCGCAAGTGGATATCGAAATTCTCGATGCTAACCTCAGGGACTACGAACTCCAC CCAGAACAACAATCTGATCATTCACTGCCTCAACTGTTATGGTGTGAGAAAAACCTCAATCGCGAACTGCAGCGGGTTCTCCACAGAAAGAACTATCTCA CTGGCAGTAACTGCTCATCTCCATATCATGGCTGTCCATTCATGGCACGGAGGGATGTTGTGGAAAGAGGAAACCTGGGTTCAGTATCATCACCATTCAG TTCTTATGCTGGAGAAGAGCTCACAAGACCAAACCAAAGTATGAGTTACAGCCAGCTGATCATGAAACTGGATCCTTGGATTAGTCCTTACAGTCCAAAG GTCCGCGACACAATCATTCGAGACATACTAACTGGACCCAGCCCTGATCATAATGGTACTACTTCTGAACATTTTGAGGAATCAAGCTCCAGACCTGTTA CTCAAACTTGTCCTTTCGATGTTTTGTACAACACCAGTCCTCCCTTGGAGAAGAACATCCCTGATTGCCATCTAAGCCACAGGCCTTTCATTCCTACTCC CATGAATGTCACTTCTGGTGACAACTCAAACACCAACTTTGATGTTGGGAACTATGGTGATGGTCCCAATACCAAGTATTCTGCTGCAGCTCCAAAGAAT CCAACACCAGAAGATCCACCTCTCCTTCATGGTGTTTCCTCAGAGGATGAGGTGGGAAATGGAGGATTTGGCAGTGGAACCAACCAGGAGTTTGGGTCTC CAGATTGGGATGGCTTCCTGCTGGCTGACAACCTCAACTTTGATGATCTTGATATTGTATTCTGA
AA sequence Show only first row Show all	>Lus10022505 pacid=23171779 polypeptide=Lus10022505 locus=Lus10022505.g ID=Lus10022505.BGIv1.0 annot-version=v1.0 MHNSEGGGRASSLSKRRSNLIRKAQEICFFGDADVAFVAFSPCGRLTKFSSKKRIEDILQKYVDLPAGQRYKIHHLELQIKKAQVDIEILDANLRDYELH PEQQSDHSLPQLLWCEKNLNRELQRVLHRKNYLTGSNCSSPYHGCPFMARRDVVERGNLGSVSSPFSSYAGEELTRPNQSMSYSQLIMKLDPWISPYSPK VRDTIIRDILTGPSPDHNGTTSEHFEESSSRPVTQTCPFDVLYNTSPPLEKNIPDCHLSHRPFIPTPMNVTSGDNSNTNFDVGNYGDGPNTKYSAAAPKN PTPEDPPLLHGVSSEDEVGNGGFGSGTNQEFGSPDWDGFLLADNLNFDDLDIVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	0	1
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	3.7	0.9598
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	4.9	0.9580
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	5.5	0.9528
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	6.5	0.9570
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	6.7	0.9510
AT1G15260			unknown protein		Lus10035880 [exp]	7.2	0.9568
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	7.9	0.9066
					Lus10010481 [exp]	9.2	0.9541
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10041966 [exp]	9.8	0.9512
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	9.9	0.9480

Compare expression of checked genes

Lus10022505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.