Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22130 235 / 3e-75 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77980 216 / 1e-67 MADS AGL66 AGAMOUS-like 66 (.1) AT1G77950 192 / 2e-59 MADS AGL67 AGAMOUS-like 67 (.1.2) AT1G18750 97 / 3e-22 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT1G69540 83 / 1e-17 MADS AGL94 AGAMOUS-like 94 (.1) AT4G09960 76 / 7e-16 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G03060 77 / 1e-15 MADS AGL30 AGAMOUS-like 30 (.1.2) AT3G58780 76 / 1e-15 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G23260 73 / 8e-15 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G13790 74 / 9e-15 MADS AGL15 AGAMOUS-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016810 [exp] 537 / 0 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 115 / 2e-29 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10019089 [exp] 114 / 1e-28 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 107 / 3e-25 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10018714 [exp] 98 / 2e-23 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10026613 [exp] 94 / 3e-21 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 91 / 3e-20 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10036761 [exp] 85 / 5e-18 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10010184 [exp] 80 / 6e-17 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087500 [exp] 363 / 2e-125 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 237 / 2e-75 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.010G167300 [exp] 86 / 2e-18 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.008G088200 [exp] 86 / 2e-18 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.015G098400 [exp] 79 / 3e-17 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.002G151700 [exp] 76 / 1e-15 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.012G100200 [exp] 75 / 1e-15 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.007G120002 [exp] 72 / 2e-15 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.019G077200 [exp] 74 / 4e-15 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.013G104900 [exp] 72 / 1e-14 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10022506 pacid=23171661 polypeptide=Lus10022506 locus=Lus10022506.g ID=Lus10022506.BGIv1.0 annot-version=v1.0 ATGGGTCGTGTAAAGCTTCAGATAAAGCGGATAGAGAACATTACTAATCGTCAGGTCACATTCTCCAAACGTCGAAATGGACTCATTAAGAAAGCTTATG AACTCGCCATTCTATGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCCGGCCGATTAAGCCATTTTTCCGGCAAGCGAAGAATTGAAGATGTCAT CGCTCGTTACATAAACCTCCCAGACCATGATCGTGAATGCGACGTAATGAATCGAGAGGATTTGCTCAAAACTCTCAAGGATCTCAAGTCCCAAAACGAC ACTGCCTTCCAAGCTACCAACCCAGAATCTACAAACTCGAACATTGAGGTGCTCCAGCAAGAAGTTTGTAGTTTGCAACGGCAACTTCAGGTTGCTGAGG ACCAATTGAACGTGTATGAACCAAACCCTCTGAAATTCTCATCCATTGGGGACCTAGAGTCATGCGAGAAGAACCTTTTAGATTCGATGTCTCGTCTCGA GGAGCGCAAAAAGTATCTTCTGAGCAACCATGTCTCCACTTATGACCATTCAAGCATGCAGATCTTATTTGACGGACGAGATGATCTTCCGAATTTCGAC AGCGATATCGCGAATTGGTTGCCGGACAATGGACATAACCAGAACTCTGTTCATGTAGTGTCAGAGTCATCCTGCATTCCTGTCAGCAATCAGTCGACGG CGACAATATTTGAAGCACTTTCTCAAGGGAATGGAAATGTGGATCCTTGTAATAACATGGGAGGAGGAAACAATATGAACAACTCAAATGGTGAGAGCAT ATCACCATGGCATCAAGCTTTTTCATCATTGTCATCAACTGAGCTCCTTGCTGCCTTCTTGCCCCCAACTTCATTTGCTCCTATTAAGCAACAAGAGGTA GAAGGACCAAGCTATACATCAATGCTGCAGCAGCAGCAGCAGCAAGCAGCAGATGCTCAATCAAACTGCCCTCAACAACAAATCCCATCTTCAAATGGAG GGGATGGTTCAGATTATGACCAGAATCTTTGCCCCCAGAGTTCAACTTGA
AA sequence Show only first row Show all	>Lus10022506 pacid=23171661 polypeptide=Lus10022506 locus=Lus10022506.g ID=Lus10022506.BGIv1.0 annot-version=v1.0 MGRVKLQIKRIENITNRQVTFSKRRNGLIKKAYELAILCDIDIALIMFSPSGRLSHFSGKRRIEDVIARYINLPDHDRECDVMNREDLLKTLKDLKSQND TAFQATNPESTNSNIEVLQQEVCSLQRQLQVAEDQLNVYEPNPLKFSSIGDLESCEKNLLDSMSRLEERKKYLLSNHVSTYDHSSMQILFDGRDDLPNFD SDIANWLPDNGHNQNSVHVVSESSCIPVSNQSTATIFEALSQGNGNVDPCNNMGGGNNMNNSNGESISPWHQAFSSLSSTELLAAFLPPTSFAPIKQQEV EGPSYTSMLQQQQQQAADAQSNCPQQQIPSSNGGDGSDYDQNLCPQSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	0	1
AT5G60330			unknown protein		Lus10018274 [exp]	2.6	0.9852
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	4.2	0.9817
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	8.9	0.9709
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	9.0	0.9677
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	9.2	0.9801
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	10.6	0.9784
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10017615 [exp]	10.9	0.9337
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	14.1	0.9699
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	14.8	0.9469
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	15.2	0.9651

Compare expression of checked genes

Lus10022506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.