Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39710 270 / 1e-92 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT5G45680 142 / 2e-42 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT5G48580 84 / 2e-20 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 80 / 5e-19 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT2G43560 76 / 1e-16 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 74 / 1e-16 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 68 / 3e-13 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 66 / 2e-12 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 64 / 3e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 64 / 1e-11 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016811 [exp] 393 / 3e-141 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10006949 [exp] 145 / 2e-43 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10024735 [exp] 125 / 2e-36 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10000197 [exp] 117 / 2e-34 AT4G39710 90 / 2e-24 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10025889 [exp] 86 / 3e-21 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10038215 [exp] 85 / 4e-19 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003170 [exp] 81 / 5e-19 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 80 / 8e-19 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10008359 [exp] 76 / 8e-17 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079700 [exp] 282 / 3e-97 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.007G087401 [exp] 152 / 3e-47 AT4G39710 158 / 1e-49 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.001G075500 [exp] 149 / 6e-45 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.002G248200 [exp] 86 / 3e-21 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.012G129200 [exp] 76 / 5e-16 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 74 / 2e-15 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 71 / 6e-15 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 69 / 4e-14 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 69 / 1e-13 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248300 [exp] 63 / 2e-11 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10022507 pacid=23171658 polypeptide=Lus10022507 locus=Lus10022507.g ID=Lus10022507.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCTACTTCCGCCATCACCACCCCAAAATCTCAATTCCGCGGTCCAGCACTTGCTTTCTTCTCAAAACCCAGTTGTTCTTGCATGCTGTCTT CTTCCAAGCCGAGGAAGCGGATAATTGATGTGGGTATTGGGATATTAGCCGCGTCAACAATGGCTCTATCTCCAATGGACGCGGATGCTACAAGGATTGA GTACTATGCAACCGTGGGAGAGCCTCTATGTGAATTCAGCTTCGTACGCTCGGGACTTGGCTACTGTGATGTCTCCCAAGGGTCCGGTGTAGAGGTCCCT TATGCCGAGTTAATCAATGTACATTACACTGCCCGGTTCGGCGATGGGACGGTATTTGATAGCAGCTATAAACGCCAAAGACCTCTTACTATGCGTCTTG GCGTTGGTAAGGTGATCAAGGGGCTGGATCAGGGGATTTTGGGGGGTGATGGAGTACCTCCAATGCACGTAGGTGGGAAGCGTAGGCTTTACATTCCTCC AAAGTTAGCATATGGACCAGAACCTGCAGGGTGCTTCTCAGGTGACTGCAACATCCCTGGGAATGCCACGCTAGTCTACGATATCAAATTCGTGGAGGTT TACTCTGGAAACAGAAAGTTAACCAATCCCTGA
AA sequence Show only first row Show all	>Lus10022507 pacid=23171658 polypeptide=Lus10022507 locus=Lus10022507.g ID=Lus10022507.BGIv1.0 annot-version=v1.0 MALSTSAITTPKSQFRGPALAFFSKPSCSCMLSSSKPRKRIIDVGIGILAASTMALSPMDADATRIEYYATVGEPLCEFSFVRSGLGYCDVSQGSGVEVP YAELINVHYTARFGDGTVFDSSYKRQRPLTMRLGVGKVIKGLDQGILGGDGVPPMHVGGKRRLYIPPKLAYGPEPAGCFSGDCNIPGNATLVYDIKFVEV YSGNRKLTNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	0	1
AT4G01150			unknown protein		Lus10012645 [exp]	2.0	0.9571
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	3.7	0.9562
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	4.2	0.9544
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	4.9	0.9539
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10034892 [exp]	5.3	0.9437
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	6.0	0.9481
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	6.5	0.9515
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	6.7	0.9518
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	8.5	0.9462
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	9.2	0.9506

Compare expression of checked genes

Lus10022507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.