Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39690 204 / 5e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016813 [exp] 704 / 0 AT4G39690 397 / 6e-131 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080200 [exp] 353 / 5e-113 AT4G39690 424 / 3e-140 unknown protein Potri.007G087100 [exp] 318 / 7e-100 AT4G39690 395 / 2e-129 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09731 [flax] [poplar] Mitofilin Mitochondrial inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10022509 pacid=23171711 polypeptide=Lus10022509 locus=Lus10022509.g ID=Lus10022509.BGIv1.0 annot-version=v1.0 ATGGCGGTTTTTTACAGGTCGATTTTGGCATTGTCATCCCGTCGATCAATTCAAAGGTTTTCCAGGCAGATAAATCCTCCTCGAGTTCCTTGTTTGAGGA AGGACTTCTCGACGAAATCCAATCAAAATGTGCCTCCAAAACCTGGTGCTGCTAAATCAAAGAGTAGTTTACCAGCAGTTCTCTTCGGAAGCACTGCCTT GGGTGGTGCTGCTTTCCTGGCGTACCAATCAGGTTATTTGGATGAATTTATCAGCAAAGAGCAGCAGGTGGGTGATAAATCAGCCATTGAAGTTAAAGGA ACGCATATGAGAAAGGATGTGGTACCCATCATTGGCGCGGATACCAAAAAATCAGATGATGTAGTGCCTGTGGAGCAACATGTTGCAACTGGGATAGATA TTAATGTTGCTCGTATTGAAGACGAACCAAAGGTCATAACTCAAACGGAACCTACTGCTGTTGAAGATGACAAGAAGGCTGATTTGCAAACCGACCTTCC TCAGCAAGAAGTTGAGAACAAGACAGAACCGCATTTGGATTTTGCACTCAATAAAGCTGATCAGAAGTATGATACGCAAACCTCTGACCACCACCAAGAT TCAAGCAGTGAAAAAGGTGAAATCCCATCTCAAGCTGAAGAATTATCAAAACCAATTGTAGAAGATGCCACAAGTGCTCTTGGGGAAAATCAAAGTTTTG AAGGTAGTCCTCGCACGGTAAATCCAGAGTCAGCATCTAGTGAAGAGCCTAATAATGAAGTTGAAGTTTCATCTATTCCGAAAGAAGATGAAATAAAGAC ACGATCTGCTGATCATTCTGCTGAAACATTAAAATCAGAGTCTGAACTTGGCGAAGGTGTTGGTGCACCAAATCTTCTCAACACTTACCATCTCAAGGAA AATACTGAAGTAATGCCTTCAACTGAGGGTCCAGGGGAAGAGGGTAGCACCGAGGAATCTGATGAAGGTTACATAACAAAAGATGGGAAGTTGGTTATGG ATTTTCTTCAAGCCATTCATGCTGCCGAAAAGAGGCAACATGAATTAGATGCTCGTGTTTTTACTGGAGAAAAAAGAGCATTGCAGGAAAAGTATGAAAA GCAATTGAGGGATTCAAGGGTGAGGGAACTTATGCGTGCAGAAGAGGCTGCAATGTTAGACAAGGAAATCAAGAGAGAGAGGGCAAAAGCAGCAGCTGCA GTGAGAGCTGTTGAGGAGAAACTGGAAAAGAAACTGAGACTGGAACTTGAGCAAAAGGAAGCTGAAGCAGAGACTAAGATGAAGCAGGTTCAGGAGTTGG CTAAAGCAGAACTGGCTGCAGCTATTGCAAGTGAGAAGGCTGCACAAATCGAAAGAATTGCCGAGGCTAATCTTCATGGTGCACTTGCATTAGAAGATGC ACTTTCTCAAGGTCTACCCATCCAGAAAGAACTGGAAGCGTTAGGCACCTTTCTGGAAGGCACGGATTTTTTTTTTTTTTTAATAGGGCCGTTGTTCCTT TGTTCCCTTCCCCTCCTCGCAGAAAAACCCCGCCACCCGGGAACAGACACTGTGTTACAGTTAAATCAAAAGTTCAATGTCCTGAAAGGAACACTCCGAC ATCACATTCTCATCCCTCCAGGTGGTGGCGGTATCTTAACACATGCTATGGCGCAGATAGCATCTTGGTTAAGGCTGAAAGAAGTGGATCCATCTGGAGA TGGGATAGAGTCTGTGATCAGTAACGTCCAGACTCTCCTATCTGAGGGAAAGCTGGCTGAAGCAGCGGATGCTCTTCAAGAAGGCGTAGGAGGGAGCCAA GCCGAGCAGGTTGCAAGTGACTGGGTAAGGCGTGCCAAGAACAGAGCCATCACTGAGCAAGCTCTAACTGTACTTCAGTCATATGCTACCTGCATCAGTC TTACTCGATCATAG
AA sequence Show only first row Show all	>Lus10022509 pacid=23171711 polypeptide=Lus10022509 locus=Lus10022509.g ID=Lus10022509.BGIv1.0 annot-version=v1.0 MAVFYRSILALSSRRSIQRFSRQINPPRVPCLRKDFSTKSNQNVPPKPGAAKSKSSLPAVLFGSTALGGAAFLAYQSGYLDEFISKEQQVGDKSAIEVKG THMRKDVVPIIGADTKKSDDVVPVEQHVATGIDINVARIEDEPKVITQTEPTAVEDDKKADLQTDLPQQEVENKTEPHLDFALNKADQKYDTQTSDHHQD SSSEKGEIPSQAEELSKPIVEDATSALGENQSFEGSPRTVNPESASSEEPNNEVEVSSIPKEDEIKTRSADHSAETLKSESELGEGVGAPNLLNTYHLKE NTEVMPSTEGPGEEGSTEESDEGYITKDGKLVMDFLQAIHAAEKRQHELDARVFTGEKRALQEKYEKQLRDSRVRELMRAEEAAMLDKEIKRERAKAAAA VRAVEEKLEKKLRLELEQKEAEAETKMKQVQELAKAELAAAIASEKAAQIERIAEANLHGALALEDALSQGLPIQKELEALGTFLEGTDFFFFLIGPLFL CSLPLLAEKPRHPGTDTVLQLNQKFNVLKGTLRHHILIPPGGGGILTHAMAQIASWLRLKEVDPSGDGIESVISNVQTLLSEGKLAEAADALQEGVGGSQ AEQVASDWVRRAKNRAITEQALTVLQSYATCISLTRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39690			unknown protein		Lus10022509 [exp]	0	1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019420 [exp]	10.7	0.7281
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	10.9	0.7636
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	22.6	0.7131
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	25.7	0.7000
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10006326 [exp]	28.9	0.7073
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	39.1	0.6554
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	47.3	0.6550
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10016945 [exp]	61.6	0.6866
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	62.9	0.6934
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	79.4	0.6185

Compare expression of checked genes

Lus10022509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.