Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55130 555 / 0 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT2G21470 70 / 1e-12 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G06460 62 / 8e-10 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT5G19370 59 / 3e-09 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) AT5G19180 52 / 6e-07 ECR1 E1 C-terminal related 1 (.1) AT2G30110 52 / 7e-07 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000697 [exp] 779 / 0 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10017479 [exp] 72 / 3e-13 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 53 / 5e-07 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10010507 [exp] 52 / 8e-07 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10034043 [exp] 52 / 8e-07 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10031292 [exp] 45 / 0.0001 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10015115 [exp] 45 / 0.0002 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031862 [exp] 44 / 0.0003 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355800 [exp] 624 / 0 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.009G120200 [exp] 75 / 5e-14 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 74 / 9e-14 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.009G075700 [exp] 58 / 1e-08 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 58 / 1e-08 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 56 / 4e-08 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G069300 [exp] 52 / 5e-07 AT5G19370 281 / 3e-94 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) Potri.010G031900 [exp] 52 / 7e-07 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 50 / 2e-06 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.002G229100 [exp] 44 / 0.0002 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10022510 pacid=23166919 polypeptide=Lus10022510 locus=Lus10022510.g ID=Lus10022510.BGIv1.0 annot-version=v1.0 ATGGAGTCCTCGAACGGATGCCACGCCGCTAGTATCATCGGCGAAATCGAGTCCCTCAAGTCTGCCAGAAGCGACATAGACCTCCGAATTAGAGCTCTGG AGGCTCAGCTCCGCGATTTGAACCTCCTGAAACCCACCCTCTTCATCAATGGCTCCGCTCCTCGTACTACCGTTGATTCTGCTGTCCCTCACGGATTGTC GCCTGATATGATTTACCGCTATAGCCGCCACCTACTGCTTTCCTCTTTTGGAGTCGAAGGGCAGTCAAACCTCGTCAAGTCCTCCATTTTAGTGGTCGGA GCTGGAGGTTTAGGCGCTCCGGCTTTATTGTATCTTGCAGCTTCTGGCGTTGGGCGTTTGGGTATAGTCGATCATGATATTGTTGAACTAAATAACATGC ACAGGCAGGTTATACACACTGAAGGATTTATTGGTCAACCGAAAGTGAAGTCCGCTGCTTCCGCCTGTCGCTCAATCAACTCCTCAATTCAGATAGTGGA ACACCAAGAAGCACTAAGAACGTCTAATGCAATTGAAATTCTGAGCCAATATGACATAGTAGTAGATGCTACGGACAATGCACCAAGCCGTTACATGATC AGTGATTGCTGTGTTGTGTTGGGGAAGCCTCTTGTGTTAGGTGCTGCATTGGGGATGGAGGGGCAGTTGACTGTCTACAATCACAATGGAGGCCCATGCT ACAGATGCCTCTTCCCAGCTCCGCCACCTACAACAGCATGCCAAAGGTGCTCTGATAATGGAGTCCTAGGAGTTGTCCCTGGAATCATAGGCTGCCTGCA AGCTCTAGAAGCAATAAAAATTGCTGCATCTGTCGGTGAGCCGCTATCGGGACGTATGCTTCTACTCGATGCATTATCATCAAGAGTTCGGATAGTCAAG ATCAGAGGAAGGGCGTCACAGTGTGAAGTATGTGGCGACAATACAACATTCACCAAAGAAGAATTTAAGAAGTTTGACTACGAGAAATTTACTCAGTCGC CTCTCTTAGCGGGGCCCTTAAAGCTCAACCTCCTTGCAGCAGATTGTAGAATAAGCAGCAGCGAGTTCCACAAGAAAGTTACAAAAGGAGAACCATACGT CCTGATCGACGTACGACCAGCCCACCATTTCAAGATTGTTTCTCTTCCAAATGCAATGAATATTCCTCTCCTGAGTATGGAGGTAAGATTACCGGAGATC ACAGCAGCTTTGAAAGAAGTGGAATGTAGCAGCAGCAGGGGAAATGGCCCTGGTTCAGCTGTAGACCTATACGTGATGTGTAGACGAGGCAACGACTCGC AGAAAGCAGTTGAGTTGTTGCACAAGATGGGGCTTCCATCTGCCAAGGATATCGTTGGTGGTTTGGAGGGCTGGGCTCGTGAGGTGGATCCGAATCTCCC CACTTACTAG
AA sequence Show only first row Show all	>Lus10022510 pacid=23166919 polypeptide=Lus10022510 locus=Lus10022510.g ID=Lus10022510.BGIv1.0 annot-version=v1.0 MESSNGCHAASIIGEIESLKSARSDIDLRIRALEAQLRDLNLLKPTLFINGSAPRTTVDSAVPHGLSPDMIYRYSRHLLLSSFGVEGQSNLVKSSILVVG AGGLGAPALLYLAASGVGRLGIVDHDIVELNNMHRQVIHTEGFIGQPKVKSAASACRSINSSIQIVEHQEALRTSNAIEILSQYDIVVDATDNAPSRYMI SDCCVVLGKPLVLGAALGMEGQLTVYNHNGGPCYRCLFPAPPPTTACQRCSDNGVLGVVPGIIGCLQALEAIKIAASVGEPLSGRMLLLDALSSRVRIVK IRGRASQCEVCGDNTTFTKEEFKKFDYEKFTQSPLLAGPLKLNLLAADCRISSSEFHKKVTKGEPYVLIDVRPAHHFKIVSLPNAMNIPLLSMEVRLPEI TAALKEVECSSSRGNGPGSAVDLYVMCRRGNDSQKAVELLHKMGLPSAKDIVGGLEGWAREVDPNLPTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	0	1
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	3.2	0.9472
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	4.5	0.9528
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	5.8	0.9525
AT5G54970			unknown protein		Lus10032643 [exp]	6.0	0.9470
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	6.9	0.9474
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	7.1	0.9524
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031335 [exp]	10.4	0.9239
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	12.0	0.9421
AT2G15000			unknown protein		Lus10013885 [exp]	12.1	0.9198
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	14.8	0.9417

Compare expression of checked genes

Lus10022510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.