Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14540 219 / 2e-73 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT5G47640 202 / 9e-67 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G37060 184 / 1e-59 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT3G53340 179 / 1e-57 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G38880 178 / 1e-57 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G13570 177 / 3e-56 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT5G47670 162 / 1e-50 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT2G47810 159 / 8e-50 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT1G21970 153 / 1e-46 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT1G09030 140 / 1e-42 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016616 [exp] 268 / 3e-92 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 201 / 7e-66 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001177 [exp] 200 / 3e-65 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10020899 [exp] 181 / 2e-57 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10015058 [exp] 177 / 9e-57 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10033477 [exp] 178 / 2e-56 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10023484 [exp] 175 / 3e-56 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10036637 [exp] 175 / 5e-56 AT4G14540 179 / 6e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10035854 [exp] 171 / 8e-54 AT4G14540 181 / 4e-58 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367500 [exp] 220 / 7e-74 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 214 / 2e-71 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 209 / 2e-69 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 209 / 3e-69 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G085000 [exp] 187 / 9e-61 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.010G216600 [exp] 186 / 2e-60 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.008G044800 [exp] 185 / 7e-60 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.005G083400 [exp] 183 / 1e-58 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 182 / 3e-58 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G065300 [exp] 175 / 1e-55 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10022514 pacid=23166928 polypeptide=Lus10022514 locus=Lus10022514.g ID=Lus10022514.BGIv1.0 annot-version=v1.0 ATGGGGGACTCAGACAACGACTCAGGAGGGCACCCGAACCTGAGCAGCGGAGGGCTTTCGTCGCCGAGGGAGCAAGACAGGTTCCTACCCATAGCAAACG TTAGTAGGATCATGAAGAAGGCGCTTCCTGCCAACGCCAAGATATCCAAGGACGCCAAGGAGACGGTACAGGAGTGCGTCTCCGAGTTCATCAGCTTCAT CACAGGGGAAGCGTCCGACAAGTGCCAACGTGAGCGGAGGAAGACAATCAACGGGGACGACCTGCTGTGGGCCATGACCACCTTAGGCTTCGAAGACTAC GTTGACCCTCTCAAGGTCTACCTTCAGCGGTTTAGGGAGCTTGAAGGCGAGAGGACCGCGGGGGTTTTCGTGGGTCGTGATAGGGATGCGGTGCCTGCCG GAGACAGCGCCGGGTTTGCCGGGGCGGCGGATGGAATGGGAATGGCTGGGTACCACGTGTATGGGTCCGGTAGTGGTGGTGGTGGTGGGTTTTATAATAA TAATAATATTATGGCGACTACTACGATGAGTCACCATGCTGGTGGTGGTAGTGGTGGTCCTGGGTTTAATGGGCCAACGGGTTGA
AA sequence Show only first row Show all	>Lus10022514 pacid=23166928 polypeptide=Lus10022514 locus=Lus10022514.g ID=Lus10022514.BGIv1.0 annot-version=v1.0 MGDSDNDSGGHPNLSSGGLSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRERRKTINGDDLLWAMTTLGFEDY VDPLKVYLQRFRELEGERTAGVFVGRDRDAVPAGDSAGFAGAADGMGMAGYHVYGSGSGGGGGFYNNNNIMATTTMSHHAGGGSGGPGFNGPTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	0	1
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	3.5	0.9045
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10016616 [exp]	4.2	0.8987
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	5.9	0.8621
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	7.7	0.8721
AT5G44005			unknown protein		Lus10008224 [exp]	8.4	0.8480
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	8.5	0.8780
AT3G02720			Class I glutamine amidotransfe...		Lus10031360 [exp]	9.8	0.8316
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	9.8	0.8072
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	10.8	0.8542
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	13.4	0.8465

Compare expression of checked genes

Lus10022514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.