Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55700 631 / 0 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT4G17090 340 / 1e-110 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 314 / 2e-100 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G15210 270 / 4e-84 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 260 / 1e-79 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G00490 258 / 4e-79 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G18670 224 / 2e-66 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT2G45880 226 / 6e-66 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 202 / 3e-57 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016615 [exp] 942 / 0 AT5G55700 734 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2) Lus10011035 [exp] 335 / 9e-109 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 330 / 9e-107 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 322 / 3e-103 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 320 / 1e-102 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10003005 [exp] 306 / 5e-98 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 292 / 3e-92 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10012804 [exp] 277 / 2e-86 AT5G18670 555 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Lus10033976 [exp] 273 / 5e-85 AT5G18670 541 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085500 [exp] 345 / 8e-113 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.001G148900 [exp] 345 / 1e-112 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 318 / 5e-102 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 317 / 2e-101 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G204200 [exp] 264 / 1e-81 AT5G18670 552 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Potri.003G143500 [exp] 256 / 3e-78 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 255 / 8e-78 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G087600 [exp] 254 / 1e-77 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083800 [exp] 246 / 1e-74 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 228 / 1e-66 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10022516 pacid=23166943 polypeptide=Lus10022516 locus=Lus10022516.g ID=Lus10022516.BGIv1.0 annot-version=v1.0 ATGCTGCGGAGCAGGACCTGCTGCATTTTCAAGGAGATAAGTTTCATTGACAGGCGGAGATTGCGAACCAAACTCCATAATGTTTCGATGGTCGCTCCCT TCAAGAAGCATCTCTTTGGCTCGCGTTGGCGAACTCTCAGCGTCAGCTACCGCATTCTGAGCATGGACGCTCGAGAAAAATCAACTTCTACTGTACTGGA TTCATCAAAGCACAAGAGGATACCAGTGTTCGTGGTGATGCCGATTGATACCTTTGGTTGTGATGCATCTGGAAGTCTGAGGATCAAAAGACTGAAGGCA TTAACTGTCTCTCTAAAAGCACTGAAGCTGGCAGGTGTCCATGGAATTGCGGTGGAGTTGTGGTGGGGAATTGTGGAACGTTTTGCTCCTCTTGAATATA ATTGGAGCCTTTATGAAGATCTCTTCAAACTGATTTCAGAATCAGGGCTGAAGTTGCATGTTGCCTTAAATTTTCATTCAAATGAACATCAGTATAGAAA GTGGGGCGTGAATCTTCCGCTGTGGATTGTAGAGATTGGTAAATGCAACAAGGATATATATTATCGAGACAGAAGTGGTCAGTCGAATGCTGATTATCTC ACACTTGGAGTGGACCGACTACCCCTATTTCATGGGCGGACACCTCTCCAATGTTACGAAGACTTCATCGTTAATTTTGTTAGCAAATTCGAATCTTATT TGGGGATTGTTATTGAAGAAATAAATGTTGGTCTTGGTCCTTCCGGAGAGCTCAGGTACCCAGCACATCCTCTGGGTGATGGCAGATGGCAATTTCCTGG AATCGGTGAATTCCAATGTTATGACAAATATATGATGAAAGACTTGAGGATGGCAGCATGTCAAGCAGGAAAGCAGGAATGGGGAGACAGGGGACCTCAT AATGCTGGTTGTTACAATAGTCTTCCCCAAGGAGTGCCGTTTTTCGAAGATGGACAGGAGAGCTTTCTATCCGATTATGGATGCTTTTTCCTGGAATGGT ACAGTAGCAAGCTAATTTGTCACGCGGATGCTATTCTGGCCAAGGCAGCTAATACATTGAAGAAGTATCAGGAAAACTTAGAAACCTCAATTCTGTTGGT GGCTAAAATTGGTGGTACCAAACTATATCACACCCAGCTGAACTTACAGCTGGTTACTACAACACTGCGCTTAGAGATGGTTACGATCCTCTTGCGTCGA TGTTATCTCGCCATTGTGCTGCACTGCATATTCCGTAAGACTCAGATACTTGTCTTCTGCGTCTACGACTGTTGCATGGGAACTTATGTTCTCAACTGCT TAGAGATGATGGACAATGAAACCCCACCACCTTACCTTTGCAGCCCGGAAGGCTTTCTTCAACAGATACGCAGAATTTCAAACAAAGGAATACATTTGAT TGGAAGAAATGCGAATGAACGATTGGATAAGACAGGATTCAGGCAAATACTTGCGAACTGTAATCACCCACAGGCAGAAGCTGTAAGGTCATTTACTTAT TTCAGAATGAATGAGAAAATATTTTCAGCTGAAAACTGGAATAATTTTGTGCCCTTCGTTAGAAAGATGAGTTCAGATTTCTGA
AA sequence Show only first row Show all	>Lus10022516 pacid=23166943 polypeptide=Lus10022516 locus=Lus10022516.g ID=Lus10022516.BGIv1.0 annot-version=v1.0 MLRSRTCCIFKEISFIDRRRLRTKLHNVSMVAPFKKHLFGSRWRTLSVSYRILSMDAREKSTSTVLDSSKHKRIPVFVVMPIDTFGCDASGSLRIKRLKA LTVSLKALKLAGVHGIAVELWWGIVERFAPLEYNWSLYEDLFKLISESGLKLHVALNFHSNEHQYRKWGVNLPLWIVEIGKCNKDIYYRDRSGQSNADYL TLGVDRLPLFHGRTPLQCYEDFIVNFVSKFESYLGIVIEEINVGLGPSGELRYPAHPLGDGRWQFPGIGEFQCYDKYMMKDLRMAACQAGKQEWGDRGPH NAGCYNSLPQGVPFFEDGQESFLSDYGCFFLEWYSSKLICHADAILAKAANTLKKYQENLETSILLVAKIGGTKLYHTQLNLQLVTTTLRLEMVTILLRR CYLAIVLHCIFRKTQILVFCVYDCCMGTYVLNCLEMMDNETPPPYLCSPEGFLQQIRRISNKGIHLIGRNANERLDKTGFRQILANCNHPQAEAVRSFTY FRMNEKIFSAENWNNFVPFVRKMSSDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10022516 [exp]	0	1
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	4.5	0.8343
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	7.5	0.8300
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	8.8	0.8340
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	8.9	0.8225
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	11.4	0.8111
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	13.4	0.8115
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	14.1	0.8208
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	14.1	0.8271
AT5G46560			unknown protein		Lus10011046 [exp]	14.2	0.8168
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	15.0	0.8042

Compare expression of checked genes

Lus10022516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.