Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55730 435 / 2e-151 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 387 / 6e-133 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 281 / 2e-91 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 265 / 9e-85 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 127 / 4e-34 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT3G46550 130 / 8e-34 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G24450 100 / 1e-23 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT4G31370 86 / 1e-18 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G03170 75 / 3e-15 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 73 / 2e-14 FLA6 FASCICLIN-like arabinogalactan 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016617 [exp] 642 / 0 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10012344 [exp] 379 / 1e-129 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 378 / 7e-129 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 376 / 1e-127 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 299 / 3e-99 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10009235 [exp] 274 / 2e-88 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 181 / 1e-54 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 124 / 2e-31 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 114 / 5e-28 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093500 [exp] 537 / 0 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 533 / 0 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 403 / 3e-139 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.014G071700 [exp] 279 / 2e-90 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 142 / 7e-39 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G097000 [exp] 129 / 2e-33 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G174900 [exp] 124 / 1e-31 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G005100 [exp] 108 / 6e-27 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 105 / 3e-25 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 71 / 1e-13 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10022517 pacid=23166882 polypeptide=Lus10022517 locus=Lus10022517.g ID=Lus10022517.BGIv1.0 annot-version=v1.0 ATGCGCTCCCCGGCGGCCTCGCTCCTCCTTGCCCTCCTTTTCCTCTTCTCCTCCGCCGTCGTCTCCGGCCACAACATTACCCGCCTCCTAGCCAAGCACC CAGACTTCTCCACCTTCAACCGCTACCTCACCCTCACTCACCTCGCCGGTGAGATCAACGCCCGAACCACCATCACCGTCTGCGCCGTCGACAACGCCGC CATGTCCTCCATCCTCGCCTCCAAACCTTCCATCAATACCATCAAGAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCCCCAAGAAGCTCCAC CAGATCACCAACGGCACCGCACTCGCCGCCACTCTCTTCCAGGCCACCGGATCTGCCGCTGGTTCCTCCGGATTCGTCAACATTACGGACATCAAGGGCG GCAAAGTCGCCCTCGGACCCGAGGATAACGGCGGAAAACTCGATGTCTTCTTCGTCAAAGGCCTCGAGGAGCTTCCTTACAACATTTCTGTCATTCAGAT CAGCAAGATTCTCCCCTCCGACGTTGCGGCGGCCCCTACTCCCGGCCCCGCCGAGTTGAATTTGACTGACATTATGTCGGCTCACGGTTGTAAGGTGTTC GCCGACACTCTGCTCGCCAATCCTGAAGCTTCCAAAGTTTACCAGGACAATGTGGAGGGAGGATTGACTGTGTTCTGCCCTATGGACGATGCATTCAAGG CCTTCTTGCCACGATTCAAGAACCTAACCGCTGCAGGCAAAGTCTCACTCCTTGAGTTCTTCGGGGTTCCTGTCTACATGTCAATGTCAATGTTGAAATC CAACAATGGGGTCATGAACACCCTCGCCACTGATGGTGCCAAGAAGTTTGACTTCACTGTCCAAAATGACGGAGAACAAGTGACGCTCAAGACCAAGAGC ACTACAGCCAGGATCACGGGGACCTTGATGGATGAGCAGCCCCTTGCAGTGTACACCATTGATAAGGTATTGTTGCCTAAAGAGCTGTTCGAGGATGCTC CTTCCCCTACCCCAGCACCAGCTCCTGCCCCTGACAAGGCTGCCGATGCACCCAAATCTAGTAAGTCAAATGATGATGATGGGTCACCAGCGGAGTCGCC AGCAGATGGACCTGATGCTGACTCAGACGATCAAACGGCAGACGATGATAGTGCTACTGCTCTGAGGCTTGGTGGTAGGGAGATTATCGGAACGGTTTTT GGTTTGTGTGTAGGAGTAATGTTGTTGTGA
AA sequence Show only first row Show all	>Lus10022517 pacid=23166882 polypeptide=Lus10022517 locus=Lus10022517.g ID=Lus10022517.BGIv1.0 annot-version=v1.0 MRSPAASLLLALLFLFSSAVVSGHNITRLLAKHPDFSTFNRYLTLTHLAGEINARTTITVCAVDNAAMSSILASKPSINTIKNILSLHVLLDYFGPKKLH QITNGTALAATLFQATGSAAGSSGFVNITDIKGGKVALGPEDNGGKLDVFFVKGLEELPYNISVIQISKILPSDVAAAPTPGPAELNLTDIMSAHGCKVF ADTLLANPEASKVYQDNVEGGLTVFCPMDDAFKAFLPRFKNLTAAGKVSLLEFFGVPVYMSMSMLKSNNGVMNTLATDGAKKFDFTVQNDGEQVTLKTKS TTARITGTLMDEQPLAVYTIDKVLLPKELFEDAPSPTPAPAPAPDKAADAPKSSKSNDDDGSPAESPADGPDADSDDQTADDDSATALRLGGREIIGTVF GLCVGVMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	0	1
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	1.0	0.9304
					Lus10029272 [exp]	2.4	0.8731
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	4.2	0.8554
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	5.1	0.8800
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	6.8	0.8161
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	9.4	0.8555
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	9.5	0.8507
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	10.1	0.8590
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	11.8	0.8336
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	12.8	0.8709

Compare expression of checked genes

Lus10022517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.