Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020956 [exp] 340 / 2e-113 ND / Lus10024489 [exp] 288 / 1e-98 ND / Lus10003786 [exp] 271 / 5e-86 AT1G59520 463 / 9e-159 CW7 (.1.2.3) Lus10024741 [exp] 259 / 7e-84 ND / Lus10039939 [exp] 233 / 8e-76 ND / Lus10023811 [exp] 194 / 1e-58 ND / Lus10013515 [exp] 186 / 4e-58 ND / Lus10033149 [exp] 187 / 6e-58 ND / Lus10018802 [exp] 150 / 3e-45 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022518 pacid=23166895 polypeptide=Lus10022518 locus=Lus10022518.g ID=Lus10022518.BGIv1.0 annot-version=v1.0 ATGTTCTGGTACGTTCGGGCATGGTTGTTGTTCACTAATATGATTGCAGGAATGGATGAAGAGAGGGAAAAATCAAAATTTTGGACAAATCGGGCGGAAC ACGCCGTGTTCCATGGCGATTTTCAGGTGCAAAAGTTCCAGGGGGTGGACACGGCTAGGAACTCGCCGTGTTCCGTGCCGTGTTCCAAGACGAGTTTTGA ATGCCAAAAGTTCCAGGGGCTGGACACGGGCAGGAACACGTCGTGTTCTGTCTGTGTTCCAAGGAATACGTCGTGTTCCCGTCACGAGATTTTGGACGCC AACTTTCAGAGGCCGAACACGGGCGTGTTCCGTAGAACACGTCGTGTTCCAGTTGCAGATTCTCTTGGTAAGCGAGGATGGGGCATGCTTCAGTCCACTT CTTTTCAGGTGCTGGGTATGCCGAATGCGGTTAAGGCACGGTGCTTCAACTTTGCTGATAAGACTGATCAGCAGGTGTGGAAAGAGATCTCCCAGAAAGC TATTACCGCTTCTGGATGGGTTGATTGGGCTGAGCTGACTACAGCAGGCATTGGAGAGCTGTTTTCCTCTGCCATTGATGCCGCCGGCCTTCGGCCTTTT TTCGATGTTAAGGAAGACGCTCAGGAGTGGGCAACCAAAGAGGTTATCACCTCTGTCCGGGTCAAGATGACGACTGATCCAAGAGAAGCTGATGCTGTCC AGTTACAGTGTGGAGGAGTCCGCCACTCCTGGTCGTTCTATGAGTTCGGGGTGTACCTCGGGTTTTACACGATGGAGGAACTCACATCTGGTCCACCATT GAATGTCTTTCCTAGAGCTACTTGCATGGCTCATGAGGAGTTTTGA
AA sequence Show only first row Show all	>Lus10022518 pacid=23166895 polypeptide=Lus10022518 locus=Lus10022518.g ID=Lus10022518.BGIv1.0 annot-version=v1.0 MFWYVRAWLLFTNMIAGMDEEREKSKFWTNRAEHAVFHGDFQVQKFQGVDTARNSPCSVPCSKTSFECQKFQGLDTGRNTSCSVCVPRNTSCSRHEILDA NFQRPNTGVFRRTRRVPVADSLGKRGWGMLQSTSFQVLGMPNAVKARCFNFADKTDQQVWKEISQKAITASGWVDWAELTTAGIGELFSSAIDAAGLRPF FDVKEDAQEWATKEVITSVRVKMTTDPREADAVQLQCGGVRHSWSFYEFGVYLGFYTMEELTSGPPLNVFPRATCMAHEEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022518 [exp]	0	1
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	2.8	1.0000
					Lus10003536 [exp]	3.2	1.0000
					Lus10011642 [exp]	3.5	1.0000
					Lus10022214 [exp]	4.6	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	4.9	1.0000
					Lus10027991 [exp]	5.5	1.0000
					Lus10011425 [exp]	5.5	1.0000
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10013028 [exp]	5.7	1.0000
AT5G54010			UDP-Glycosyltransferase superf...		Lus10039237 [exp]	5.7	1.0000
					Lus10011832 [exp]	6.3	1.0000

Compare expression of checked genes

Lus10022518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.