Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55820 169 / 6e-42 WYR WYRD, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016620 [exp] 2424 / 0 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368200 [exp] 505 / 1e-152 AT5G55820 172 / 6e-43 WYRD, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03941 [flax] [poplar] INCENP_ARK-bind Inner centromere protein, ARK binding region
Representative CDS sequence Show only first row Show all	>Lus10022519 pacid=23166885 polypeptide=Lus10022519 locus=Lus10022519.g ID=Lus10022519.BGIv1.0 annot-version=v1.0 ATGACAAGTGTAGAGAAGCTGCTCGTGCAGATCTTCGAGAAGAATAAGTTGATAATAGAGCAGGTCAAGAAGCAATCTGACCTCTTCGATCAGCATCTCG CTTCAAAATGTATCCTCGACGGAATCTCCCCTCCTCCATGGCTTTTCTGCACCTCTTTCTCGTCTGTTTTATCGGATTCAAACGTCCTGAAGAAGGAGGA GCTGTTATCAGAGCTTTTGCTTACGGTTTCTCAACCAGGAAGCATTTACCCTAATAGTCACCATTCCGTTCATGAAAAGCCTTCTGCTCATGTTTCTAAC GAGGTTCCACCAAATTACTTGGAAGGAGATGGTCGCGATGTCAACAAAGCCACTAATACAGTTGACAGCTTTGCTCTGTCTCAATTGCCTACCACTGACA GTCCCTGTGCTCTTAATCAAGTCCTTGAGCAGGATTCTAGTGTCACATCTCCGCAGGAGTGTAGAGATACCCAAGGTCCTGATAATTTTGCTGATCAAAG TCAATCATTGGTGAGGATTGAAAGATCAAAATCGAGGCAAAGGGCATTGGAGACTCGTAGTAATTCAATACTAGCTAAACGACGAGCATATGATGAGCCT GATCCTGGTGTCTGGACTAGTCAATATGAAGCAATTTCTACAAAGAGCAAACTGAAAGTGACTGAGTGTTTGAAGGAAGGGCACAACAACAATAATTTTG ATTGTGGAACTGGGACGGGGACACCTTGCCAATCATCCAGTCCTATGAATGAGTTATTCAGTGTTAGCAAGTCTTCAATTATTGCCAAGGTAGATGGTCT TACAGATACTAATGGCAAGTTGATGGAGCAGTCTTATTATGCTAATCCGATGTCAGCAACAGCCAATCCTACTGCGACTGTGGATGCAGTTTGTGCAGCA GAAGAAGCAAATGGTGGTGATTGCAGCATCAATGAAGTTGGTAGTGCTATTCATTCTGCTAGAGCTACAAACTCTAGACATTCAAGCATTCAAACTGGAC TTGTACCGGATACTTCAGAGGTGGTTACGTGCATTCATAATGTAGCTGAAGATTGTAGATCTGGGCAGCCTACTGAAAAATCCTTAAAAGATGCTCATAA TGAGAACGCGTTACATGAATTGATCAAACCTTCCTCTGTAATTTTCCAGAGTCATGCACACCCAAATTCGCAGGCGACGGATGTCAAGAGCATAGAAATG GGGAGCGATGGTGATCTTGTGAGAGTAACAAGCCACGATAATGAAGGCGTGCAGCTAGATTTTCCTCTCAGTATTAGAAATCAAGATGATTGTGAGCGAA ACCAGGTTCCCCACCATGCCAATATTATAACGGACTTGATTAAACCTGCAACGGAAGAACCTGAATCTCAAATAACTAAGACGGGCAATGACAACATGGG ATTACATAAACCGACACAGTCCATAAGCTCCAATCAACAAAATGGTAATGTTTATGGTGGTTCGATAGAAATAGATGTTTCTTCTAACAATGCTGAAGAT GCAGATATTGCAGTTGCAGATTTTAACCGATTATTGCAAATACTGCAATCGTCAACTTTGGTTGAGCAAGAAGTCTGCTTGCTTCCAGCTTTGGGTACAC ATCCTAGTAGCCTGCCTTGTACTGAAAGAACCAGTCTTGCTGACATGGAAACATGTGGTGCAGTTCCAGCTGAAACAGATTTAAGGTCTCCTGGACCAGT TGCACCGGATTCTGTAACCTCTAGGTCTAATTCAGCTGCCAATACTAGATTTGCCTCAAGGTCAATAAGTGAAGATGCCATGGTGATCGAGCCCAATCAA CTTCATTTTGATGACGTGGAGGCTAACCGGCCGTCTGATTTTGATGGCCAAGACAAGGATGGTTCATTATCACTATTGACACAATCTCCGACAGTGCGAT TCAATACCTGTTTATTGACTGAAGTAGCTTCTGTGAGCAACCAAGAACATCACAACTTATTGCCTGATACACTTGAGGGCATTGATAGCCAGGAGCACTC TACGGAGGATTCGTTGCGAGATCTTGTCAACGACAGTATCAAGTCTGTTGATGCAAGTAATTTCAACTTTGTACAGGATCATAATTTTTTTGTTGCTTCT CAAAATTCATGTGTTTATAGTTCTGTGATGGGTTCATGGCCTCAACACAAACGCATGAAGATTGCTGATAGGGCAAGTTATGCATGTCCCTTTCCTTCAA GCTTAACTACATCGCCATTTCAGCCCTTCCTAAAAAATGAGGCTATGGGCTCAAATGACTATACACCTGTTGGTGAAGAGAGGCGTGAATATGCAGATAA CCATGAAGTACAGCCATGTGAAGTTTTAACATCCACGCTGCCAGTTAGAGAGGATGAGAATACCTTGGAAGGGAGGGACAGAAGTGAAAGTTCTATTGTC ACTTTTACGCATGAACAGCAAGAAGCACCTTCAGTCTCAAGTCTAGCAAAGCTGGCTACTGGCTCATCTGAAATGTCTTTGTCTGGGCATGCCAAAATGT GGGATCCAACCAAATTTTTCGAGCTGCGAACTTCTGATGAGAACCAAGTTTCATCACAGGTTTCCGATAGATTTTATTTGGGAAGCACCTTTTTAACTCG CACTGACAACATTATCCAGATCGAAAATTCTGACCTTGGAGAGAATAGCAGACCATCAGATTACCCTGTCGTTTCTCCGCTTTCTGTGGATCTGGTTGCT CCTAATCAAAATATAGTTGAGTTGGAGAGATTTTTTGTGGAAACGGATGACTCAGTATCTTGTGCTACCAGAAACGGGACAAGCTTTGGCACACTGGACT GTCCGAGCATTGCCCTTGATCATGCTAGTGTTTTGGAGCAGTTTCGCAAATCTGCTCGTCTGCAAACTCCACTGTCCAGTTTTCCGGATACTTGTAAATT ACAAAACACTTTAGGTCTAGAACAAACCATCCCGGATGTCTTTTTGGGGAGCTTGGACTTGAAGGGGCGCCTTGTTGAGGATGGCGACACCACTAAGGAG ATTGAAGCCAGTGGCCATTGCTTGAATGAAGAACTGCACTGTGCATATCGTGAGATTCCTCATCCTTACTGCTTACCTTCTCCTAATGCTCATTTTCATC AGGAAAGTAGCAAACCTTACATGTCCCCGGTAGGGAGATTCTGGGATGGAATCCCACCAAAATCTCGCAGTTCAGAGAAACGAGCAAGTTCAATTCCAGA TCTTCCCAGCATTCAAGAGGAGACTGAGAATATGGATGCCATAACTGATTCAATGCATGATGACATCATTCCAGAAAAGGCAATTAAGGATGCTGAGAGA AAACCACTTGCCGGGCTGACTGAATATGCAAATCGTCCAATGTCGGTATGTGAAGATGAGAGGTTAGAAGATAGAGATAGTCTTGCATCTGTGAGCACAG AATTCAGTTTGGCTAGCACTTGCAAGATGACAAATTTGAAACCTGGGAATCGGATGAGTACCAGATCGAGATTTGCATATGGAAGTACTGGGAAGGTGAA TCCGAGGGTCCGACTTGGATCAGATGGCGTTAGAAGGCATGATGGAACATTACAGAACAGAATCAGTAAACCAAAGTTGTCTAGGCAAAACGAGTCAAGA AAACCTAGCTCTGTCGTATTGGGGAAGGAGCCTAAATGTAACAATATCGTGTCCAATATTACTTCCTTTGTTCCCCTAGTGCAACAAAAGCAAATGGCTG CTGCTATTACAGGGAAGAGGGATATCAAAGTGAAGGCCCTGGAGGCTGCCGAGGCTGCAAAGCAACTTGCTGAAAAGAAAGAAAATGATCGAAGGTTGAA AAAGGAAGCCTTGAAACTTGAGCGGGCAAGGATCGAAGAGCAGAACTTAAGGCAGCTGGAGTTAGAGAAAGAAAGAAAAGTAAAAGAACGGAAGAAAAAG GAGGCTGAGATGGCAGCCAAAAAAAGACAGAGAGAAGAAGAACAGAAGAGGGAGAGAGAAAGGAAAAAGAAGCGCGTTGAAGAAACAAGAAGGCAGAACA TGGAACACAGGGAAAAGAGAAACGGGAACAAAGAAGAAATGAAGCCTGGAGCAACGGATGTAAATGCATGTAAAACAAAGGAATCTAAGGAAAAATCAGC AGAACATCAAGGGATAGGGAAGACAAAGCCAGGAAGTCAAGTACTTAGAGAGACCGAGACCGAGACGGAGCATACAGACACTCATCTCCCAGCAATGGGC ACAAAGAGTCCAAGTATTGCACCTGAAGCTTGTGATGCGATGAGCAATTCTGGTGATAAATCAAAGGTGATAAATGAAATATGTGAGAGAAAAGAGAAAG ATGGCTTGATTTCCAACATGATACCTGAAGAATCATACGCAATATCTCCATACAAAGTCTCAGATGATGAAGATGAGTACGAGGATGATAATAAGCAGAA TACGAAGTTTGTTCCTTCCTGGGCCAGAAAGCGTAGCATATCATTGGCTATCTTGTCCCAGCAGACGATAGATCCGGAATCAATCTTCCACCTGAAAGCT TTTTTCTTCTTCACTTGCAGGACCAATTCCAGAAGCTGGAGATTGTAA
AA sequence Show only first row Show all	>Lus10022519 pacid=23166885 polypeptide=Lus10022519 locus=Lus10022519.g ID=Lus10022519.BGIv1.0 annot-version=v1.0 MTSVEKLLVQIFEKNKLIIEQVKKQSDLFDQHLASKCILDGISPPPWLFCTSFSSVLSDSNVLKKEELLSELLLTVSQPGSIYPNSHHSVHEKPSAHVSN EVPPNYLEGDGRDVNKATNTVDSFALSQLPTTDSPCALNQVLEQDSSVTSPQECRDTQGPDNFADQSQSLVRIERSKSRQRALETRSNSILAKRRAYDEP DPGVWTSQYEAISTKSKLKVTECLKEGHNNNNFDCGTGTGTPCQSSSPMNELFSVSKSSIIAKVDGLTDTNGKLMEQSYYANPMSATANPTATVDAVCAA EEANGGDCSINEVGSAIHSARATNSRHSSIQTGLVPDTSEVVTCIHNVAEDCRSGQPTEKSLKDAHNENALHELIKPSSVIFQSHAHPNSQATDVKSIEM GSDGDLVRVTSHDNEGVQLDFPLSIRNQDDCERNQVPHHANIITDLIKPATEEPESQITKTGNDNMGLHKPTQSISSNQQNGNVYGGSIEIDVSSNNAED ADIAVADFNRLLQILQSSTLVEQEVCLLPALGTHPSSLPCTERTSLADMETCGAVPAETDLRSPGPVAPDSVTSRSNSAANTRFASRSISEDAMVIEPNQ LHFDDVEANRPSDFDGQDKDGSLSLLTQSPTVRFNTCLLTEVASVSNQEHHNLLPDTLEGIDSQEHSTEDSLRDLVNDSIKSVDASNFNFVQDHNFFVAS QNSCVYSSVMGSWPQHKRMKIADRASYACPFPSSLTTSPFQPFLKNEAMGSNDYTPVGEERREYADNHEVQPCEVLTSTLPVREDENTLEGRDRSESSIV TFTHEQQEAPSVSSLAKLATGSSEMSLSGHAKMWDPTKFFELRTSDENQVSSQVSDRFYLGSTFLTRTDNIIQIENSDLGENSRPSDYPVVSPLSVDLVA PNQNIVELERFFVETDDSVSCATRNGTSFGTLDCPSIALDHASVLEQFRKSARLQTPLSSFPDTCKLQNTLGLEQTIPDVFLGSLDLKGRLVEDGDTTKE IEASGHCLNEELHCAYREIPHPYCLPSPNAHFHQESSKPYMSPVGRFWDGIPPKSRSSEKRASSIPDLPSIQEETENMDAITDSMHDDIIPEKAIKDAER KPLAGLTEYANRPMSVCEDERLEDRDSLASVSTEFSLASTCKMTNLKPGNRMSTRSRFAYGSTGKVNPRVRLGSDGVRRHDGTLQNRISKPKLSRQNESR KPSSVVLGKEPKCNNIVSNITSFVPLVQQKQMAAAITGKRDIKVKALEAAEAAKQLAEKKENDRRLKKEALKLERARIEEQNLRQLELEKERKVKERKKK EAEMAAKKRQREEEQKRERERKKKRVEETRRQNMEHREKRNGNKEEMKPGATDVNACKTKESKEKSAEHQGIGKTKPGSQVLRETETETEHTDTHLPAMG TKSPSIAPEACDAMSNSGDKSKVINEICERKEKDGLISNMIPEESYAISPYKVSDDEDEYEDDNKQNTKFVPSWARKRSISLAILSQQTIDPESIFHLKA FFFFTCRTNSRSWRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	0	1
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	1.4	0.9640
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	2.4	0.9635
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	2.4	0.9654
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	5.5	0.9526
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	6.7	0.9588
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	7.2	0.9597
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	8.5	0.9561
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	10.1	0.9585
AT4G15890			binding (.1)		Lus10001471 [exp]	10.5	0.9525
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	11.4	0.9517

Compare expression of checked genes

Lus10022519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.