Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55830 442 / 2e-149 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 287 / 3e-89 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 189 / 6e-53 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 184 / 2e-51 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 173 / 4e-47 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 169 / 1e-45 RLK receptor lectin kinase (.1) AT3G53810 168 / 2e-45 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 165 / 2e-44 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60270 163 / 1e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 161 / 5e-43 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016620 [exp] 781 / 0 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 207 / 2e-59 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 202 / 1e-57 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 196 / 3e-55 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 192 / 4e-54 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 190 / 3e-53 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 187 / 2e-52 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 184 / 1e-50 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 182 / 4e-50 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G093700 [exp] 505 / 1e-173 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 498 / 1e-171 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.005G189500 [exp] 214 / 5e-62 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 201 / 2e-57 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 197 / 1e-55 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035800 [exp] 187 / 4e-53 AT3G53810 540 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 182 / 2e-50 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 177 / 4e-49 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 178 / 6e-49 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 176 / 2e-48 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10022520 pacid=23166910 polypeptide=Lus10022520 locus=Lus10022520.g ID=Lus10022520.BGIv1.0 annot-version=v1.0 ATGCTTCCATCCGCCTCATTCCTTCTCCTCTTCCTCATCATCACATACGGTGCCGCCGGAGCCGCCAACTACACCTTCGACTTTAACTTCCCATCCATCG CCGTCCGCAACCTCACCCTCCTCGGCGACTCCTACTTCCGCGACGGCGTGGTCGGTCTCACCCGCGAAGTCACCGTCCCTACTTCAAGCTCCGGCTCCGT CATCTACATCAACCCCATTCCCTTCTCGGACCCGGATTCCCCTCCCTCCGCCGCTTCTTTCTCCTCAAGATTCACCTTCTCCGTCGCCAACGTCAACCCC AGCTCTTTCGGCGACGGCCTCGCTTTCTTCCTCTCCCGCGACAACCAGACCATGGGCAGCCCCGGCGGTTACCTTGGCCTCGTCAACGCCTCCCTGTTGA CCAAGAACAAGTTCGTCGCCGTGGAATTCGACACTCGGGTGGACTCCCACTTCGGCGACCCCAACGAGAACCACGTCGGATTAGACATCGACAGCCTGAT TTCCGTCAAGACGGCAGATCCATTAACCCAGGGAATCGATTTGAAGAGTGGGGATCCAATCACCGCCTGGGTTGACTACGACGTCGGCGACCTTAACAAT TCCACCGCTGCTGCAGCAATCTTGCAAGTCTTCTTGAGCTACTCCAGTACTTCCAAGCCCCAAGTCCCTCTGTTATCCGTCGACGCCGACCTCTCTGACT ACCTCAAAGGAGACATGTACGTCGGGTTCTCGGGCTCCACTGAAAGATCCACGGAGCTCCACTCGATTCATAATTGGAGCTTCAACATGACGAGACAAGG ATTGCCGCCATCGCCACTGAGGCCAAGATCCGCGATTCCTCATAACGTCTCCGAAAGTTCGATCATCATAACATCGTCGGATATTCCGTCTTCTTCCAAC CCTAAAAACAAGAACCACAAGAAGCTCGGATTAGGGCTCGGAATCGCCGGGCCATCTTTCTTCTGCGCGTTTCTGGTGGTATTCGGTTATATTTCGTTCA AGAAATTGCACAGGATGAGAAGTAGTACCGGGAAAGCAGTGCTTGTGACGGGGCGTCCGAAGGAATTCAATTACAGAGAGCTGAGCTCGGCTACGAGAGG GTTCCATTCCAGCAGAATAATCGGGAAAGGAACGTTCGGTAACGTCTACAAGGCGTTCTTCGTCTCGACAGGAACAATCGCCGCCGTGAAGAGATCGAAA CACTCACACGAAGGGAAAACAGAGTTCCTAGCAGAGTTGTCGATCATCGCCGGCCTCTGCCATAAGAACCTCGTCCAGATGCTCGGCTGGTGCGTCGAGA AAGGAGAGCTACTGTTGGTGTATGAGTTCATCCCACACAGCAGCCTCGACAAGGTCCTCCACCACCAGGACGACTCCTCGTCCGGCGGGCTGTCGTGGGC TCAGCGGCGGAACGTGGCGGTGGAGCTAGCCTAG
AA sequence Show only first row Show all	>Lus10022520 pacid=23166910 polypeptide=Lus10022520 locus=Lus10022520.g ID=Lus10022520.BGIv1.0 annot-version=v1.0 MLPSASFLLLFLIITYGAAGAANYTFDFNFPSIAVRNLTLLGDSYFRDGVVGLTREVTVPTSSSGSVIYINPIPFSDPDSPPSAASFSSRFTFSVANVNP SSFGDGLAFFLSRDNQTMGSPGGYLGLVNASLLTKNKFVAVEFDTRVDSHFGDPNENHVGLDIDSLISVKTADPLTQGIDLKSGDPITAWVDYDVGDLNN STAAAAILQVFLSYSSTSKPQVPLLSVDADLSDYLKGDMYVGFSGSTERSTELHSIHNWSFNMTRQGLPPSPLRPRSAIPHNVSESSIIITSSDIPSSSN PKNKNHKKLGLGLGIAGPSFFCAFLVVFGYISFKKLHRMRSSTGKAVLVTGRPKEFNYRELSSATRGFHSSRIIGKGTFGNVYKAFFVSTGTIAAVKRSK HSHEGKTEFLAELSIIAGLCHKNLVQMLGWCVEKGELLLVYEFIPHSSLDKVLHHQDDSSSGGLSWAQRRNVAVELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55830			Concanavalin A-like lectin pro...		Lus10022520 [exp]	0	1
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	10.6	0.7224
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	16.7	0.7036
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10012771 [exp]	27.7	0.6627
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	103.9	0.6821
AT1G08530			unknown protein		Lus10021985 [exp]	216.8	0.6408
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	279.5	0.6173

Compare expression of checked genes

Lus10022520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.