Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55830 261 / 2e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 207 / 1e-63 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 188 / 2e-56 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 152 / 2e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 148 / 6e-42 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 145 / 6e-41 RLK receptor lectin kinase (.1) AT5G42120 145 / 9e-41 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 145 / 1e-40 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 139 / 9e-39 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 139 / 1e-38 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016620 [exp] 353 / 4e-113 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 205 / 1e-62 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 182 / 2e-54 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007079 [exp] 174 / 2e-54 AT5G10530 335 / 3e-111 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 168 / 3e-51 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 174 / 5e-51 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 168 / 4e-50 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 163 / 5e-47 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 162 / 6e-47 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368300 [exp] 276 / 3e-90 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 275 / 2e-89 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G087800 [exp] 211 / 5e-65 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 210 / 2e-64 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 172 / 1e-50 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 172 / 2e-50 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 171 / 4e-50 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 171 / 4e-50 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 171 / 5e-50 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 170 / 6e-50 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022521 pacid=23166941 polypeptide=Lus10022521 locus=Lus10022521.g ID=Lus10022521.BGIv1.0 annot-version=v1.0 ATGCTGGACGTGAATTACAAGGCGAGGTTAGGGGATTTCGGATTGGCGAGGCTGATGGAGCATGATAAGAGCCCAGTGTCAACTCTGACAGCAGGGACGA TGGGGTATATGGCTCCGGAGTATCTGCACTACGGGAAGGCGACGGAGAAGACTGATGTTTTTAGCTACGGGGTAGTGTTGCTGGAATTGGGTTGCGGGAG GAGGCCGATAGAGAGGGAGTCGGAGAGCCAGAGGATGGTGAATCTGGTGGATTGGGTGTGGGGGTTGTATGGAGAAGGGAAAGTGTTGGAAGTTGCTGAT GAGAGGTTGAATGGTGAGTTCGATGTCGAGGAGATGAGGAAGATGGTTATGATTGGACTGAGCTGTGCAAATCCTGATAGTGGCGAGAGGCCGAATATGA GGAAGGTGCTTCAGATGCTGAATGGGGAAGTTGAGGTTAAGGCTCTTGCTAAGACTAAGCCTATTCTTACTTTCTCTTCTGGGTTCACTCTCTCGCTTCA GGATATTACCTCTGACTCTGAATACTAG
AA sequence Show only first row Show all	>Lus10022521 pacid=23166941 polypeptide=Lus10022521 locus=Lus10022521.g ID=Lus10022521.BGIv1.0 annot-version=v1.0 MLDVNYKARLGDFGLARLMEHDKSPVSTLTAGTMGYMAPEYLHYGKATEKTDVFSYGVVLLELGCGRRPIERESESQRMVNLVDWVWGLYGEGKVLEVAD ERLNGEFDVEEMRKMVMIGLSCANPDSGERPNMRKVLQMLNGEVEVKALAKTKPILTFSSGFTLSLQDITSDSEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55830			Concanavalin A-like lectin pro...		Lus10022521 [exp]	0	1
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	4.9	0.7569
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	5.7	0.7383
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10038807 [exp]	8.8	0.6884
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	12.6	0.6679
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	17.2	0.6606
					Lus10010518 [exp]	19.4	0.5829
AT5G47920			unknown protein		Lus10002566 [exp]	20.9	0.6663
AT5G57770			Plant protein of unknown funct...		Lus10019972 [exp]	24.7	0.6038
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	25.8	0.6821
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	27.9	0.6658

Compare expression of checked genes

Lus10022521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.