Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13180 291 / 2e-95 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G55920 76 / 4e-15 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26600 73 / 4e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G26180 61 / 4e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G06560 50 / 8e-07 NOL1/NOP2/sun family protein (.1) AT4G40000 49 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 47 / 9e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66180 42 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016622 [exp] 382 / 1e-130 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10032368 [exp] 75 / 1e-14 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023095 [exp] 75 / 1e-14 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025004 [exp] 74 / 2e-14 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026452 [exp] 70 / 5e-13 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020761 [exp] 52 / 4e-07 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10007337 [exp] 50 / 1e-06 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10026840 [exp] 45 / 4e-05 AT4G40000 954 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020217 [exp] 45 / 5e-05 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368500 [exp] 303 / 7e-100 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.001G369600 [exp] 79 / 3e-16 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G224000 [exp] 73 / 3e-14 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G204900 [exp] 52 / 3e-07 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G096100 [exp] 48 / 7e-06 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10022523 pacid=23166914 polypeptide=Lus10022523 locus=Lus10022523.g ID=Lus10022523.BGIv1.0 annot-version=v1.0 ATGGCGCGTCCGCTTTCCCTCCATGCCTGTCTCATTGCTGAGACGCGGGACGCCGCAGCCCCAAGACCGCAGAGATTCTCAAAGACTGCGCACAAGCTCA AGGCATCGGTTTCCATCCCTGAAAACGGTCACCGATGTGGTTGGAGGTACCATTCGTTGGAGGAAAACGTTAGACTAGCAAAGCTTGCCCTTAGACCCGG TGCTGGTAATCTGGTGAATGGAATTCTTAGAAAGCTATTGTTGCTCAAGGAAAGTGACTCCCTTCCTCTACCCAAAGTTGAAGGTGATGATCGGGCACAA GCACGTGCTCTTGCCACTATTCATTCTCATCCTGTGTGGATGGTTAGGCGTTGGACTAAGTATATTGGCCAAGAAGATACAGTTAGGTTACTGGTTTGGA ACAACAGTGACCCCAGTTTCAGCTTAAGGGCAAACTGTGGAAAAGAAGTTGCAAGAGCTGAGCTTGTGAAGCAACTTCATCTGTTGAAGCTACAAGGTCT ATGTGCAGTTCAGGACGAGAGTGCAGGCATGGTAGTTTCTGTTGTGGATCCTCAACCAAATGAGACCATTATCGACTGTTGTGCGGCTCCTGGAGGGAAG ACACTATATATAGCATCTTTGATGAAAAATAAAGGCAAGGTAAATGCAATTGATGTGAACAAAGGCTGGTTGCGAATTCTTAAGGAGACCGCCAAGGTGC ATCAAGTTGATAGGATGATCACCACAGTAGCTGCTGATCTTCGTGAATTTTCCGAGCAAACTAAAGAGAAATATGATAAAGTTTTGCTCGATGTTCCATG TTCTGGGCTTGGTGTGCTCTCCAAGATTCTGCAGGAGAGAAAGTTTGAAGGTTCCTCGTCGACAAGCAGTAAGGAGAAGCGACGTGGGATGGTGCTGGTG CTTGCTAAATGA
AA sequence Show only first row Show all	>Lus10022523 pacid=23166914 polypeptide=Lus10022523 locus=Lus10022523.g ID=Lus10022523.BGIv1.0 annot-version=v1.0 MARPLSLHACLIAETRDAAAPRPQRFSKTAHKLKASVSIPENGHRCGWRYHSLEENVRLAKLALRPGAGNLVNGILRKLLLLKESDSLPLPKVEGDDRAQ ARALATIHSHPVWMVRRWTKYIGQEDTVRLLVWNNSDPSFSLRANCGKEVARAELVKQLHLLKLQGLCAVQDESAGMVVSVVDPQPNETIIDCCAAPGGK TLYIASLMKNKGKVNAIDVNKGWLRILKETAKVHQVDRMITTVAADLREFSEQTKEKYDKVLLDVPCSGLGVLSKILQERKFEGSSSTSSKEKRRGMVLV LAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	0	1
AT5G02710			unknown protein		Lus10003988 [exp]	5.5	0.8528
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	10.2	0.8919
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	10.6	0.8232
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	11.0	0.8026
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10022158 [exp]	12.1	0.8162
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10009704 [exp]	12.2	0.7948
AT5G63100			S-adenosyl-L-methionine-depend...		Lus10015621 [exp]	14.6	0.7424
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10035389 [exp]	16.7	0.8671
AT1G03910			unknown protein		Lus10030000 [exp]	20.8	0.7962
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	23.7	0.8441

Compare expression of checked genes

Lus10022523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.