Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G22845 122 / 2e-34 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 44 / 2e-05 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 43 / 4e-05 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016624 [exp] 420 / 4e-152 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10043160 [exp] 370 / 1e-127 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032588 [exp] 357 / 8e-127 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006360 [exp] 258 / 7e-88 AT3G07680 268 / 5e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 253 / 4e-86 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10012315 [exp] 253 / 4e-86 AT3G07680 263 / 8e-90 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10035821 [exp] 251 / 2e-85 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 121 / 4e-34 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006623 [exp] 120 / 7e-34 AT3G22845 349 / 5e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369000 [exp] 338 / 2e-119 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 124 / 2e-35 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 43 / 4e-05 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10022525 pacid=23166887 polypeptide=Lus10022525 locus=Lus10022525.g ID=Lus10022525.BGIv1.0 annot-version=v1.0 ATGAAAGGAGTTTTTATTGTGGTGCTTGTGGCAATGTCTTTGATACCCCAAGAGGTGTTGGGGATAAGATTTGTGATTGATAGGGAAGAATGCTTCTCTC ATGATGTCAAGTATGATGGGGACACGGTTCATGTCTCCTTTGTGGTGATCAAGGTCGATTCATCTTGGGATCGTAGTACCGATGGAATTGATCTTGTGAT TAAGGGGCCTACCGGTGAACAAATCCATGATTTCCGGGACAAAATCAGCGAGAAGCATGAATTTGTGGCTCATCAAAAAGGAGTCCATCGTTTTTGTTTC ATTAACAAGTCTCCCTACCACGAGACTATAGACTTTGATATTCATGTAGCCCACTTTTCGTACTATGAGGAGCATGCAAAGGATGAGCATTTGAAGCCGC TTGTAGAGCAGATATCAAAGTTGGAGGATGCACTTTACAACATCCAATTCGAACAGCATTGGCTAGAGGCACAGACTGAACGCCAGGCTTTAATAAATGA TGCAATGGGACGAAGGGCTGTTCATAAGGCATTCTTTGAATCGGCAGCACTGATCGGAGCAAGTGTGGTCCAAGTTTACCTTCTCCGGCGCCTTTTTGAG AGGAAGATGGGGATGTCTAGGGTCTAG
AA sequence Show only first row Show all	>Lus10022525 pacid=23166887 polypeptide=Lus10022525 locus=Lus10022525.g ID=Lus10022525.BGIv1.0 annot-version=v1.0 MKGVFIVVLVAMSLIPQEVLGIRFVIDREECFSHDVKYDGDTVHVSFVVIKVDSSWDRSTDGIDLVIKGPTGEQIHDFRDKISEKHEFVAHQKGVHRFCF INKSPYHETIDFDIHVAHFSYYEEHAKDEHLKPLVEQISKLEDALYNIQFEQHWLEAQTERQALINDAMGRRAVHKAFFESAALIGASVVQVYLLRRLFE RKMGMSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	0	1
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	2.4	0.8738
AT5G67490			unknown protein		Lus10000389 [exp]	3.3	0.8480
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	3.5	0.8897
AT5G03460			unknown protein		Lus10014419 [exp]	3.9	0.8900
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10018238 [exp]	4.5	0.8670
AT1G69980			unknown protein		Lus10036679 [exp]	6.5	0.8656
AT5G45660			unknown protein		Lus10002778 [exp]	7.5	0.8545
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	8.1	0.8659
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10009706 [exp]	8.8	0.8477
					Lus10000816 [exp]	9.0	0.8342

Compare expression of checked genes

Lus10022525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.