Plant FIBer expression Database

Lus10022527 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04220 84 / 2e-18 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
AT2G20990 69 / 2e-13 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
AT1G20080 64 / 2e-11 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022529
[exp]
184 / 3e-59 ND /
Lus10023529
[exp]
107 / 1e-26 AT5G04220 498 / 3e-173 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10040414
[exp]
103 / 3e-25 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10037993
[exp]
94 / 8e-22 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10009226
[exp]
79 / 2e-16 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10013563
[exp]
71 / 5e-14 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Lus10017268
[exp]
71 / 7e-14 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Lus10005069
[exp]
68 / 8e-13 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Lus10026515
[exp]
66 / 3e-12 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G223900
[exp]
87 / 1e-19 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Potri.008G038300
[exp]
87 / 1e-19 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Potri.009G134200
[exp]
78 / 3e-16 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Potri.004G174600
[exp]
73 / 9e-15 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Potri.005G241700
[exp]
67 / 2e-12 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Potri.002G019800
[exp]
64 / 1e-11 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10022527 pacid=23166947 polypeptide=Lus10022527 locus=Lus10022527.g ID=Lus10022527.BGIv1.0 annot-version=v1.0
ATGCTTAAAATTCTACATGAGATTTCCTTGTGGGCGAAGTCTCCTCACTGTGAAGGAGTGGATTGGTACAACAAACAGATACAAATTCTACATGAGATTG
CCTTGTGGGTGAAATCTCCTCACTATGAAAGAGAAGATTGGTTCAAGAAATTTGGCTTACCAATGTGGCCATATTTTTATAAGGCCATTTGTGGCACTAT
CCAAACCACAATGCAAACTAAGTACATTGGAAACTATGGTGTTGAAGCTACTGAGTTTGAGGATCTGAGTCTTGGAACTCCTCCTCCCACTACTCATGAT
CATGTTGGCTTAATTCATGCCAAGGGTGAAGATCATAGTAGTGACATCGGTGATGTAATTGATGAGGAGAAGTTGCCTTCCTATGCAAAATTAGGCTCAA
TTTTTGGTGTTAGAGATGGAGTTGAGTTTGAGAGAGCTAGCTCGTACGATCAGCACTGTCGCAATGTCAAGCATGGAGTAGGAGTGATTCTCGAAACACG
TCGGACTTATTGTGGTTCCTGTTTTGTGGATGAATTCTTGATCAAATTGCAGTACCTACCTGAAGATGCCAACGCTTGGGAGCTAGCATCGATTTTGTTT
AATGACAAATTCCTTTCACTCGATAATAAGGACAATACTGCTGCTTATGGGGGAAGTAATGATAGACTACAAATTCGTGAAAGACCTGGCCCGCACGATC
CGGCCGTCGTTCAACTTGCAACATAG
AA sequence
>Lus10022527 pacid=23166947 polypeptide=Lus10022527 locus=Lus10022527.g ID=Lus10022527.BGIv1.0 annot-version=v1.0
MLKILHEISLWAKSPHCEGVDWYNKQIQILHEIALWVKSPHYEREDWFKKFGLPMWPYFYKAICGTIQTTMQTKYIGNYGVEATEFEDLSLGTPPPTTHD
HVGLIHAKGEDHSSDIGDVIDEEKLPSYAKLGSIFGVRDGVEFERASSYDQHCRNVKHGVGVILETRRTYCGSCFVDEFLIKLQYLPEDANAWELASILF
NDKFLSLDNKDNTAAYGGSNDRLQIRERPGPHDPAVVQLAT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G04220 SYT3, NTMCTYPE1... synaptotagmin 3, Calcium-depen... Lus10022527
[exp]
0 1

Lus10022527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.