Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022527 [exp] 49 / 2e-07 AT5G04220 84 / 2e-18 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10022529 [exp] 47 / 3e-07 ND / Lus10005510 [exp] 44 / 8e-06 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022528 pacid=23166926 polypeptide=Lus10022528 locus=Lus10022528.g ID=Lus10022528.BGIv1.0 annot-version=v1.0 ATGAGTCTTCGAACTCTTCCTCCCACTATTCATGATCATGTTGGGTTAATTGATGCCAAGGGTGAAGATGATAGCAGTGACATTGTTGATGCGTTGCTCC GTTACGCTGCCTGCAACAGTGTGATCGTTTGTTTTTTGTCCATGGAGTTTTTGCTAAAAACCAGGTGGATTTCGGGTGGGGAGGACTTGTTGGTACAACT TCAGATTGGTTCGGTGAATGGAAAATGGGGTGACCACTCGAGTCCTTATTGTGGGAAGAGTTTTCAGCAGTTGTTCTCCACCGATTTGGCACTACAACTC TGTCTTGTGCACCTCCGTCACCAAGACAGCTTGCAGCTTCATGGTCATACAATCCTTCTATATTTGCTCGCGAGGACTACACAAATGGGACACCAGAGTA CATCACGATTTACAGGTTTTACACTCCAATTGTCACCTTGA
AA sequence Show only first row Show all	>Lus10022528 pacid=23166926 polypeptide=Lus10022528 locus=Lus10022528.g ID=Lus10022528.BGIv1.0 annot-version=v1.0 MSLRTLPPTIHDHVGLIDAKGEDDSSDIVDALLRYAACNSVIVCFLSMEFLLKTRWISGGEDLLVQLQIGSVNGKWGDHSSPYCGKSFQQLFSTDLALQL CLVHLRHQDSLQLHGHTILLYLLARTTQMGHQSTSRFTGFTLQLSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022528 [exp]	0	1
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10022744 [exp]	1.0	1.0000
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10009292 [exp]	2.2	0.7423
AT2G42000		AtMT4a	Arabidopsis thaliana metalloth...		Lus10022998 [exp]	2.4	0.8497
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	4.9	0.7383
AT4G14746			unknown protein		Lus10035902 [exp]	9.8	0.9143
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	18.9	0.7653
AT5G05280			RING/U-box superfamily protein...		Lus10036380 [exp]	26.3	0.7315
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	28.1	0.7315
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	29.8	0.7315
AT5G59190			subtilase family protein (.1)		Lus10040254 [exp]	31.5	0.7315

Compare expression of checked genes

Lus10022528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.