Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022527 [exp] 183 / 2e-59 AT5G04220 84 / 2e-18 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10022528 [exp] 47 / 4e-07 ND / Lus10023529 [exp] 44 / 8e-06 AT5G04220 498 / 3e-173 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 42 / 4e-05 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 39 / 0.0004 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 39 / 0.0004 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038300 [exp] 39 / 0.0003 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022529 pacid=23166934 polypeptide=Lus10022529 locus=Lus10022529.g ID=Lus10022529.BGIv1.0 annot-version=v1.0 ATGCAAACTGAGAACATTGGAAACTATGGTGTCGAAACTACTAAGTTTGAGCATCTGAGTCTCATAACTCTTCCTCCCACTATTCATGATCATGTTGGCT TAATTTATGCCAAGGTTGAAGTTGATAGCAGTGACATTGGTGATGTAATTGATGAGGAGAAGTTGCCTTCCTATGAAAAAATTGAGTTTGAGAGAGCTAG CTCGTATGATCAGCATTGCCCCGACGACAAGCATGGACTAGGAGGGATTCTCAAAATGCGTTGGACTTATTGTGGTTCCTGTTTTGTGAATGAATTCTTG ATCAAATGGAAGTACCTACTTGAAGATGACGTCGCTTGGGAGCTAGCATCGGTTTTGTTATATGACCGATTCCTTCCACTCGGCATTGAGGACAATGTCG CTACTTAA
AA sequence Show only first row Show all	>Lus10022529 pacid=23166934 polypeptide=Lus10022529 locus=Lus10022529.g ID=Lus10022529.BGIv1.0 annot-version=v1.0 MQTENIGNYGVETTKFEHLSLITLPPTIHDHVGLIYAKVEVDSSDIGDVIDEEKLPSYEKIEFERASSYDQHCPDDKHGLGGILKMRWTYCGSCFVNEFL IKWKYLLEDDVAWELASVLLYDRFLPLGIEDNVAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022529 [exp]	0	1
					Lus10001326 [exp]	3.5	1.0000
					Lus10026755 [exp]	5.1	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	6.2	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	7.2	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	8.1	1.0000
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10003924 [exp]	8.9	1.0000
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009470 [exp]	12.0	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	12.0	1.0000
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10014470 [exp]	13.0	1.0000
					Lus10015823 [exp]	13.2	1.0000

Compare expression of checked genes

Lus10022529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.