Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43870 466 / 2e-164 Pectin lyase-like superfamily protein (.1) AT3G59850 449 / 1e-157 Pectin lyase-like superfamily protein (.1) AT1G05660 411 / 2e-142 Pectin lyase-like superfamily protein (.1) AT1G05650 409 / 2e-141 Pectin lyase-like superfamily protein (.1) AT2G43890 407 / 5e-141 Pectin lyase-like superfamily protein (.1) AT2G43880 407 / 8e-141 Pectin lyase-like superfamily protein (.1) AT2G43860 387 / 5e-133 Pectin lyase-like superfamily protein (.1) AT1G65570 387 / 6e-133 Pectin lyase-like superfamily protein (.1) AT1G43080 276 / 2e-89 Pectin lyase-like superfamily protein (.1) AT2G40310 276 / 2e-89 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002124 [exp] 535 / 0 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 529 / 0 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 511 / 0 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 486 / 4e-172 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 481 / 1e-169 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 475 / 9e-168 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 380 / 6e-130 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 372 / 7e-127 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 369 / 2e-125 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144100 [exp] 503 / 6e-179 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 474 / 2e-167 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 472 / 1e-166 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 471 / 7e-166 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 466 / 3e-164 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 466 / 6e-164 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 465 / 1e-163 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 466 / 2e-163 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 462 / 2e-162 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 450 / 7e-158 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10022530 pacid=23166932 polypeptide=Lus10022530 locus=Lus10022530.g ID=Lus10022530.BGIv1.0 annot-version=v1.0 ATGGCACCTCAATCTAACAAATTTAACCTCCATTCTACCCTCATTTCCGTTATATTACTCGTATTATTAACTTTACTAACTGCCTCCCCAGCAGAAGCAG CAGGTAGGCGACCACAGTTCAACGTCGTCAGATTCGGAGCCAAACCTGACGGAAGGACAGACTCCACCAACGCCTTCCTAGCAGCATGGAATCGAGCTTG CGGGTCAAGGCAACGGCCCATACTGTACGTGCCAAGAGGAAGGTACCTCACTCGAACCATGACATTCAATGGACCATGTAAGAACCGTAACATCTTCTTC AAAATTGATGGTACCCTTGTCGCTCCTTCCAACTTCTGGACTATTGGTAACAACGCCAACTGGATCGGTTTCCGCCATGTCAATGGTGTCACCATCTCCG GCGGTCTACTTGATGCCAGGGGCAAGGCCTTGTGGGCTTGTAAGAAGTCCGGGTGGCATTGCCCCTCCGGTGCCACGACATTGGAAATCTCAAACTCGAG AAATGTTGTGGTAAGTAGATTGACGTCAGTGAACAGCCAGATGTTTAACATAGTGGTGAACTACGGTCAGAATGTGAAATTCCAAGGTGTGAGGGTGTAT AATCCTGGGAATTCCCCAAACACAGACGGCATCCATGTCCAGTTTTCAACAGGGGTGAGCATCGTGAACTCGAAAGTGGCCACAGGGGACGATTGTATCT CCATTGGTCCTGGAACAGCTAACATGCTGGTACAGAAAGTAGCATGTGGTCCTGGCCATGGAATCAGCATTGGGAGCCTGGCTAAGGACGTTAGGGAGCA AGGGGTGCAAAATATTACAGTGAGATCAACAACTTTCACCGGAACAACGAATGGTTTCAGAATCAAGGCGTGGGGGAAACCCAGCAACGGATTTGCTAGA AACATTCTATTCCAGCGTGCCACCATGAGAAATGTTGAGAATCCCATCATTATTGACCAACAGTACTGTCCTGATAAAAACTGTCCTCAATCGGGCTCCG GGATCCAAGTGAGCGATGTGACGTACCGAGACATCCAAGGGACATCTGCAACACGAGTTGCGGTGAACTTTGACTGCAGCCGAAGCAAGCCCTGCAAAGG AATCAGATTGCACAATGTCAAGCTTACTTACAGGAGCAGAGCCGCAGCTGTTGCGTCTTGTAAATATGCTGATGGATATGCTATTGGCTTTGTCCAGCCA AGGAGTTGCCTTTAA
AA sequence Show only first row Show all	>Lus10022530 pacid=23166932 polypeptide=Lus10022530 locus=Lus10022530.g ID=Lus10022530.BGIv1.0 annot-version=v1.0 MAPQSNKFNLHSTLISVILLVLLTLLTASPAEAAGRRPQFNVVRFGAKPDGRTDSTNAFLAAWNRACGSRQRPILYVPRGRYLTRTMTFNGPCKNRNIFF KIDGTLVAPSNFWTIGNNANWIGFRHVNGVTISGGLLDARGKALWACKKSGWHCPSGATTLEISNSRNVVVSRLTSVNSQMFNIVVNYGQNVKFQGVRVY NPGNSPNTDGIHVQFSTGVSIVNSKVATGDDCISIGPGTANMLVQKVACGPGHGISIGSLAKDVREQGVQNITVRSTTFTGTTNGFRIKAWGKPSNGFAR NILFQRATMRNVENPIIIDQQYCPDKNCPQSGSGIQVSDVTYRDIQGTSATRVAVNFDCSRSKPCKGIRLHNVKLTYRSRAAAVASCKYADGYAIGFVQP RSCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	0	1
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	1.0	0.9944
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	1.4	0.9927
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	2.0	0.9851
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	2.4	0.9874
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	3.7	0.9771
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	4.4	0.9722
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	4.5	0.9826
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	4.7	0.9791
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	5.7	0.9799
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	6.0	0.9822

Compare expression of checked genes

Lus10022530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.