Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55860 421 / 2e-138 Plant protein of unknown function (DUF827) (.1) AT1G12150 257 / 5e-77 Plant protein of unknown function (DUF827) (.1) AT4G17210 128 / 5e-31 Plant protein of unknown function (DUF827) (.1) AT2G26570 74 / 2e-13 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT3G13190 69 / 2e-12 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2), Plant protein of unknown function (DUF827) (.3) AT4G33390 67 / 2e-11 Plant protein of unknown function (DUF827) (.1) AT1G45545 58 / 2e-08 Plant protein of unknown function (DUF827) (.1) AT5G16730 47 / 6e-05 Plant protein of unknown function (DUF827) (.1) AT5G42880 44 / 0.0006 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016626 [exp] 900 / 0 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10039107 [exp] 227 / 8e-66 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1) Lus10038751 [exp] 220 / 4e-63 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 66 / 9e-11 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 62 / 2e-09 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10024335 [exp] 49 / 5e-06 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Lus10028461 [exp] 45 / 7e-05 AT2G17940 104 / 3e-27 Plant protein of unknown function (DUF827) (.1) Lus10041916 [exp] 44 / 0.0002 AT2G17940 102 / 2e-26 Plant protein of unknown function (DUF827) (.1) Lus10033572 [exp] 44 / 0.0005 AT1G66840 274 / 2e-83 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369200 [exp] 652 / 0 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.016G005200 [exp] 253 / 2e-75 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) Potri.006G004100 [exp] 244 / 2e-72 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 71 / 2e-12 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 65 / 1e-10 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 64 / 2e-10 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.019G047600 [exp] 56 / 8e-08 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.013G079000 [exp] 54 / 4e-07 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.002G023000 [exp] 48 / 7e-06 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 45 / 9e-05 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10022531 pacid=23166911 polypeptide=Lus10022531 locus=Lus10022531.g ID=Lus10022531.BGIv1.0 annot-version=v1.0 ATGCCTGAGAGTTACTTTCAGAGTTTCGAAACAGGTTGCCAATGTTGTCTTTCTAGTCATTATGCAGAGGCAGTGGAATCGATAGCTTTTCTTGATGTCT CATCTGATCAACCTTTCTATGGTCAGGAAGAGCAACATAATTCAAATATGGTGGCAAAGGAGCATCAAAGTACCACTGATTCTCCTAAAACGATGGTGGG TGAAATCGACACGAGGGCGCCCTTTCAATCTGTCAAAGATGCTGTTACCCTATTTGGAGAAGGTGCTTTCTCTGGAGAAAGACCAGCCATAAAAAAGTCA AAGCCTCAATCTGCAGAGCGAGTTTTAGCAAAAGAGACACAGCTTCATGTAGCCCAGAAGGACTTGAACAAGCTAAAGGATCAGCTAAACAATGCTGAAA CAACCAAGGCTCAAGCATTATTGGACCTTGAAAAGGCTAAAAGGACGGTTGATGATCTGACACAAAAACTCAATACTGTCAATGAAGCGAAAGAGCTTGC AATGAAAGCGACAGAAGCTGCAAAATACCAGATTGAGCAAATTGAGGAAACAAAGAACCGTCCGACTGATGGTGCCAGGCTGCAGGACTTGGAGTCTGCA AGGGAACAGTATTTAACTGTATTTTCCGAACTTGATGTCGCAAAGCAAGAACTAAGGAAACTTCGTCAGGAGTCTGATGCATCCTTGTCGGCCAAGCTTG CTGCTATTAATCAAGCTGCAGAAGCTGACCATGCAGCCAAAGTGAATGTGGAAAAAGTTAGTGAACTCTCCAAGGAAATCTCATCTATACAAGAATCAAT TGGGCAAGTTAAGCTTGCATCTCTTCAGACGCAGCAAGACCAGGAAAAAATATTTACTGAGAAAGACTTTCAGAAACAGTCTTACAAGGTTACCTTGGAA GCAACAGCAAATAAGCTTCTTGCATTAAAAAATGATTTTGATCCGGAACTTGCCCAAAATCTTGAAAAGGAACTGACAGAAACGATGAGTGAGATTAGAG GACTGCAAGAGCAAATGGACAGTGCAAAGACTTCAGATATGGATTCTGTGAAAGCTGTCACTTCAGAGCTAGATGGTGCTAAGGAGTCACTGCAGAAAGT AGTGGAAGAAGAAAGTGCTTTGAGAAATTTGGTTGAATCTTTGAAGCTAGAACTGGAGAGTGTGAAGAAAGAGAATTTGGAACTTAAGGAGAAAGAGACA GAGACAGAATTCACTGCCGGAAACCTGCATGTCAAGCTTCAGAAATGTAAGTCGGAGCTCGAATCAGCCATTGCAGAGGAATCCAAGGCAAGTGGTGCTT CAGAAGAAATGATCACAACTCTCCACCAATTATCGGTGGAAGCAGAAAATGCACGTTATGAAGCTGAAGAGATGAAGAACAAAGCTGAGGAGTTAAAGAA GGAAGCTGAAGCAACCAGAATTGAGCTAGAAGAAGCAGACAAGAAGCTGACGATTGCCTTGGAAGAAGCTGAAGAGGCAAAGACAGCTGAGACAAGGGCT CTTGATCAGATAAAGGCACTGTCAGAGAGAACTAGTGCTGCACGGGCCTCGACATCTGAGTCAGGTGCCAATATCACGATCTCAAGGGATGAGTTTGAGG CATTGTGCCGAAAAGCGAAGGGGTCTGACAAATTGGCTGAGATGAAAGTGGCAGCAGCTGTGGCTCAGGTGGAAGCTGTAAAGGCTAGTGAAAATGAAGC CCTTAAAAGAGTGGAAGCAATGGAGATGGAGATAAAGGATATGAAAGCTGCAACGAATGAGGCACTGAAGAGGGCAGAGATGGCAGAAGCAGCTAAAAGG GCAGTGGAAGGAGAATTGAGAAGGTGGAGAGAAAGGGAGCAGAAGAAGGCAGCTGAAACAGCTTCTCGGATTCTTGCAGAAACACAGATGGCTTCTGCAG CATCCCCTCTACATTATAATGTAGGGAGGTCCATCCAGAAGCTGAACACAATGCCGCTACAGAAGGTGGTGGAGGTGAGGAAGTTCGAAAAGGGGAAAAG CTCAGCATCGAAGAAGAACCTTGGTGGTATCTTTAATAGGAAAAAGAACCAAGTTGAAGGTGGTGGATCTTCTTCTTACTTGCCCGGTGAGAAGGCTGTA TGA
AA sequence Show only first row Show all	>Lus10022531 pacid=23166911 polypeptide=Lus10022531 locus=Lus10022531.g ID=Lus10022531.BGIv1.0 annot-version=v1.0 MPESYFQSFETGCQCCLSSHYAEAVESIAFLDVSSDQPFYGQEEQHNSNMVAKEHQSTTDSPKTMVGEIDTRAPFQSVKDAVTLFGEGAFSGERPAIKKS KPQSAERVLAKETQLHVAQKDLNKLKDQLNNAETTKAQALLDLEKAKRTVDDLTQKLNTVNEAKELAMKATEAAKYQIEQIEETKNRPTDGARLQDLESA REQYLTVFSELDVAKQELRKLRQESDASLSAKLAAINQAAEADHAAKVNVEKVSELSKEISSIQESIGQVKLASLQTQQDQEKIFTEKDFQKQSYKVTLE ATANKLLALKNDFDPELAQNLEKELTETMSEIRGLQEQMDSAKTSDMDSVKAVTSELDGAKESLQKVVEEESALRNLVESLKLELESVKKENLELKEKET ETEFTAGNLHVKLQKCKSELESAIAEESKASGASEEMITTLHQLSVEAENARYEAEEMKNKAEELKKEAEATRIELEEADKKLTIALEEAEEAKTAETRA LDQIKALSERTSAARASTSESGANITISRDEFEALCRKAKGSDKLAEMKVAAAVAQVEAVKASENEALKRVEAMEMEIKDMKAATNEALKRAEMAEAAKR AVEGELRRWREREQKKAAETASRILAETQMASAASPLHYNVGRSIQKLNTMPLQKVVEVRKFEKGKSSASKKNLGGIFNRKKNQVEGGGSSSYLPGEKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	0	1
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	1.0	0.9632
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	1.7	0.9587
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	2.0	0.9557
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	2.0	0.9595
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	3.2	0.9522
AT5G11680			unknown protein		Lus10020200 [exp]	3.5	0.9510
AT3G53490			unknown protein		Lus10015041 [exp]	5.1	0.9438
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	7.3	0.9471
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	8.0	0.9478
AT5G55860			Plant protein of unknown funct...		Lus10016626 [exp]	8.5	0.9384

Compare expression of checked genes

Lus10022531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.