Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26620 424 / 1e-145 Sucrase/ferredoxin-like family protein (.1) AT5G55900 362 / 4e-122 Sucrase/ferredoxin-like family protein (.1) AT5G40510 223 / 7e-69 Sucrase/ferredoxin-like family protein (.1) AT3G27570 217 / 4e-66 Sucrase/ferredoxin-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016627 [exp] 687 / 0 AT4G26620 489 / 8e-172 Sucrase/ferredoxin-like family protein (.1) Lus10022274 [exp] 243 / 2e-76 AT5G40510 358 / 4e-123 Sucrase/ferredoxin-like family protein (.1) Lus10002520 [exp] 214 / 1e-64 AT5G40510 328 / 4e-110 Sucrase/ferredoxin-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369300 [exp] 472 / 8e-165 AT4G26620 515 / 0.0 Sucrase/ferredoxin-like family protein (.1) Potri.001G344400 [exp] 268 / 1e-85 AT5G40510 358 / 2e-122 Sucrase/ferredoxin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06999 [flax] [poplar] Suc_Fer-like Sucrase/ferredoxin-like
Representative CDS sequence Show only first row Show all	>Lus10022532 pacid=23166886 polypeptide=Lus10022532 locus=Lus10022532.g ID=Lus10022532.BGIv1.0 annot-version=v1.0 ATGGCAAGCCATCACAGGGAAGACCCACTTTCCTACCCTACCTCCATCATCAACAACAACAACCCCTCTTCATCTTCTTCTCCGATCACCGTCTCCGATT ACCTCGACCCCGCCCCTGCCTTCCTCTCCTCCGACCCATCCTCCAACTCCCTCCTTGGAAGTGCCTCCAATAGTTTCCAGAATGATCCAGGTTTCCTCAC CGACACTAGTACCAACATCGATGCTGAATTCGGCTTCTCTCGCCCTGACTTCCGTCAGAGCCCCCTCGTCGGCACCGTCCAGTTCTACCAGCGCCATCTC TATCTCTGTTATAAGAACCCTTCCGTCTGGCCTACCAGGATCGAGGCTGCCGAGTTTGATCGCCTTCCCAGGTTGCTCTCGGCTGCTGTCACTGCTAGGA AGGCCGACATGCTTAAAGAGGTAGTCGTCTTGATTGAATGTGCTGGATTGGGACTTGTTTCAGTTTGTGCTCTACTTACTGTTGGTTTGGACTTTGGGTG GACCCGTCTGACGATATGCGAAGGGCATGATGGGACAGAAACCTCTAATGGCGATGTATTGATCTTCCCTGACATGGTTAGATACAGGAGGTTAACACAT TTTGATGTTGACACATTTGTGGGAGAAGGGCTAGTCAAAGATGGGGAATGGTTGCCTGGAACTCCAGAGAAACTTCACGGTTCCTATGTGTTTGTATGTT CTCATTCCTCCAGAGATCGTCGTTGTGGTGTTTGTGGTCCAGTCATAATTACCAGATTTAAAGAAGAGGTAGAAGTACGTGGTCTCCAAGCTAAAGTCTC TGTCAGCGCATGCTCTCACATTGGAGGCCAAAAGTATGCTGGAAATATCATCATTTTTGGATCAAGTGTTAGTGGAGGCATTAGTGGACACTGGTATGGA TATGTTTCTCCTGATGATGTGCCAATATTTCTCGAACAACATATTTGCAGAGGAGAGATTGTGGATTCTCTGTGGAGGGGCCAGATGGGTTTGTCTGAAG CGGACCAAATTAAGTGGCAAGAACAAAGGCTACAACTGAACGGAAAAGTTGATGTGGAGGATAGCAGCGAAGCACCAAAACCAAAAGAAACAAGCACATC ATTATCTGTGTCCAATGTTGAAGCCAGTGGCTACTCGCAGGAAAATGGTAAGTGTACTTGCAGTCAAAATCCCAGCGTGAAAGAAACCAACGAGAAAGAA GCAATGCTGTCTGTATCGGAGGAGAAGAAGAACACCATGAAATTGCTGTCCCGTCTTAACAGTGGTAAAAAGTCACCAATGCATAGGCTTTATGGGAAGT CTAAGTGGATTGAAAGGTGGGAGCTTGAAGATACATATGCAGCTGCTGCTGTGGTTTGTGCAGCAGTTTCAGTTGCAGTTGCATACAACTGTTACAGACA ACTGAGTTAG
AA sequence Show only first row Show all	>Lus10022532 pacid=23166886 polypeptide=Lus10022532 locus=Lus10022532.g ID=Lus10022532.BGIv1.0 annot-version=v1.0 MASHHREDPLSYPTSIINNNNPSSSSSPITVSDYLDPAPAFLSSDPSSNSLLGSASNSFQNDPGFLTDTSTNIDAEFGFSRPDFRQSPLVGTVQFYQRHL YLCYKNPSVWPTRIEAAEFDRLPRLLSAAVTARKADMLKEVVVLIECAGLGLVSVCALLTVGLDFGWTRLTICEGHDGTETSNGDVLIFPDMVRYRRLTH FDVDTFVGEGLVKDGEWLPGTPEKLHGSYVFVCSHSSRDRRCGVCGPVIITRFKEEVEVRGLQAKVSVSACSHIGGQKYAGNIIIFGSSVSGGISGHWYG YVSPDDVPIFLEQHICRGEIVDSLWRGQMGLSEADQIKWQEQRLQLNGKVDVEDSSEAPKPKETSTSLSVSNVEASGYSQENGKCTCSQNPSVKETNEKE AMLSVSEEKKNTMKLLSRLNSGKKSPMHRLYGKSKWIERWELEDTYAAAAVVCAAVSVAVAYNCYRQLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26620			Sucrase/ferredoxin-like family...		Lus10022532 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10013153 [exp]	9.6	0.6956
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	12.6	0.6692
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	14.6	0.6933
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	14.9	0.6692
					Lus10037794 [exp]	27.3	0.6217
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10001806 [exp]	40.7	0.6579
AT5G36930			Disease resistance protein (TI...		Lus10029811 [exp]	41.4	0.5957
AT5G65960			GTP binding (.1)		Lus10035977 [exp]	43.2	0.6474
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10021335 [exp]	55.2	0.6448
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	55.2	0.6191

Compare expression of checked genes

Lus10022532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.