Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55840 365 / 9e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 329 / 9e-115 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G39180 67 / 9e-13 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 65 / 6e-12 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 64 / 1e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 63 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 61 / 9e-11 ATSFH3 SEC14-like 3 (.1.2.3) AT4G36490 60 / 2e-10 ATSFH12 SEC14-like 12 (.1) AT2G16380 59 / 3e-10 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 58 / 1e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016628 [exp] 463 / 1e-166 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 385 / 2e-136 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10043160 [exp] 368 / 4e-126 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038752 [exp] 351 / 2e-122 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039106 [exp] 340 / 4e-118 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022790 [exp] 63 / 2e-11 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 60 / 4e-10 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10026356 [exp] 59 / 8e-10 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 59 / 8e-10 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369400 [exp] 373 / 4e-131 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.006G004000 [exp] 363 / 2e-127 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 354 / 1e-123 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G119700 [exp] 62 / 4e-11 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.004G157700 [exp] 61 / 1e-10 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 61 / 1e-10 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 61 / 1e-10 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.002G032600 [exp] 58 / 1e-09 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G076200 [exp] 58 / 1e-09 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 57 / 2e-09 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10022533 pacid=23166905 polypeptide=Lus10022533 locus=Lus10022533.g ID=Lus10022533.BGIv1.0 annot-version=v1.0 ATGAAACCAATCGTTCCAACTGAATTGTATACATCAATTCGGGATACTCAGCTTGTCGGATTGTCAGGTTACTCTAAAGAGGGTCTTCCTGTTGTTGCTT GCGGTGTGGGGCAAAGCACGTATGACAAAGCTTCTGTTCATTACTATGTCCAGTCACACATCCAAATGAATGAATACCGGGACCGTGTAGTATTGCCTAA TGCGACGAAGAAATATGGAAGGCACATAGGCACATGTATTAAGATCTTGGATATGACTGGCCTAAAATTTTCAGCATTAAATCAAATTAAGTTGTTAACT GCAATTTCTACAACCGACGACTTAAATTATCCAGAGAAGACGGAGACATATTACATTGTCAATGTCCCATACATTTTTTCAGCCTGTTGGAAGGTTGTAA AGCCTTTATTGCAGGAGAGGACAAGGAAGAAAATCCAGATAATGGATTATTCATCGCTGCCTCATTTCTGTAGAAAAGAAGGCTCTGGATCATCTCGTGT TGCAGCAAGTGGAACCACCGTAAACTGCTTCTCGTTAGATCATCCTTTGCATCAGCAGTTATACGACTTCGCTAAACAACAAGCTGCCTTGGAGGAATCT GCTTCACCTCTGAAGCAAGGTTCCGTCCATGTAGATTTCCCAGAGCCTGACGCTAACGATACTAAGATCATGAAGACGATAGAGTCCGAGATCCACTAG
AA sequence Show only first row Show all	>Lus10022533 pacid=23166905 polypeptide=Lus10022533 locus=Lus10022533.g ID=Lus10022533.BGIv1.0 annot-version=v1.0 MKPIVPTELYTSIRDTQLVGLSGYSKEGLPVVACGVGQSTYDKASVHYYVQSHIQMNEYRDRVVLPNATKKYGRHIGTCIKILDMTGLKFSALNQIKLLT AISTTDDLNYPEKTETYYIVNVPYIFSACWKVVKPLLQERTRKKIQIMDYSSLPHFCRKEGSGSSRVAASGTTVNCFSLDHPLHQQLYDFAKQQAALEES ASPLKQGSVHVDFPEPDANDTKIMKTIESEIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	0	1
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	2.4	0.9197
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	3.5	0.9102
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	3.7	0.9132
AT1G60783			unknown protein		Lus10004622 [exp]	4.5	0.9090
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	6.5	0.9053
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	10.2	0.9028
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	12.0	0.8984
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	12.4	0.9052
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	13.1	0.9017
AT1G63300			Myosin heavy chain-related pro...		Lus10027462 [exp]	14.7	0.8245

Compare expression of checked genes

Lus10022533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.