Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47750 672 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 627 / 0 D6PK D6 protein kinase (.1) AT4G26610 625 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT2G44830 550 / 0 Protein kinase superfamily protein (.1) AT3G27580 506 / 7e-175 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 501 / 8e-174 Protein kinase superfamily protein (.1) AT1G16440 492 / 3e-170 RSH3 root hair specific 3 (.1) AT1G79250 490 / 1e-168 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 486 / 6e-167 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G03640 468 / 3e-155 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016629 [exp] 981 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 636 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 630 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 561 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 559 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 491 / 2e-169 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10028208 [exp] 494 / 3e-169 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 490 / 4e-169 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 490 / 3e-164 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004900 [exp] 688 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 677 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 585 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 584 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 574 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 513 / 2e-178 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 502 / 8e-173 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.008G080600 [exp] 498 / 2e-171 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 496 / 3e-167 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 494 / 7e-165 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022534 pacid=23166901 polypeptide=Lus10022534 locus=Lus10022534.g ID=Lus10022534.BGIv1.0 annot-version=v1.0 ATGATGATGGCCTCAAAACCTGGCAGCAGAAGCTCTCCAGAGAAACCAAGGAAACCGGCTAGTCAAGCGCCAGAAGCTAATCTCCGGAAGCAGCCTTCTT CTTCGCAGATTACAAAGACGAGCCAACCGGAGCCTGCTATGCCCATTAAACCATCTAAAACTACACACAGTATTGCATCAAAGATAGCAACAACAGCAAC TGGAGCCAGTAAATCAGAGAGTTCTCCTCGGCTAATGGATGGTGCTGATTATTTAGCTAATAAAGTAACCTCTGGGTTGTCCTTTGCCAACTCGACCCAA ATTCCAATTTGTGCGGATCTTGAAGGGAATAACAGTATGGTTTCTCTAGTGAGTGAAGAGAAGCCAGCGGAGAATATTGACATTAGCCTTACTTCTGCCA GTGATGGGACTAGCAGCATGGCGAAAACTAGTGGAAGTGCCAAAATTAGTGGGCGGACCGATTTTATTGAGAGTGGGAAGAATAGTATTTACAGAGGAAG CACGGGCAGTGATATAAGTGATGAAAGTAGTTGTAGCAGCTTAAGCAGTGGTGTCAACAAGCCTCATAAAGCCAATGATGTGAGGTGGGAAGCTATACAG GCTGTACGCTCCAGAGATGGTGGCTTAGGTGTGAGCCATTTCAGATTGCTCAAGAGGTTGGGCTGTGGAGACATTGGGAGTGTGTATCTGTCAGAGTTGA GTGGAACAAAGTGTTATTTCGCGATGAAAGTTATGGACAAAGCATCTTTGACAAGTCGCAAGAAGCTTCTTCGAGCTCAAACCGAGAGAGAAATTCTCCA GTGTTTGGACCATCCTTTCCTTCCAACTCTGTATTCCCACTTCGAGACTGACAAGTTCTCCTGTCTGGTTATGGAGTATTGCCCTGGAGGCGACTTGCAC ACTCTCCGGCAGAGACAACCAGGAAAGCATTTTTCTGAACGAGCAGTCAAATTCTATATCGCAGAGGTTCTACTTGCAATGGAATATCTCCACATGCTGG GAATAGTGTATCGTGATCTCAAACCAGAAAATGTTCTTGTCCGTGAAGATGGTCATCCATCCTGTGTTGTACCCACTACATGCTTTTCACCTCGGGCATT TTTCGGAAAATCAAAGAAAGAGAAGAAACTGCCCAAGACAGAGATGGGGAATCAAGTCAGCCCTCTGCCAGAGCTTATAGCAGAGCCAAGTGATGCACGT TCCATGTCATTCGTGGGAACCCACGAGTATTTGGCACCAGAGATCATCAAGGGTGAAGGTCATGGTAGTGCTGTGGATTGGTGGACTTTGGGGATCTTTA TCTACGAGCTATTATTTGGTAAAACACCTTTCAAAGGGTCTGGAAACAGAGCCACGTTGTTCAACGTAGTTGGCCAGCCATTGAGATTTCCTGAGGCACC TGTTGTGAGCTTCTCTGCCAGAGACTTAATAAGGGGCTTGCTAGTAAAAGAACCACAAAACAGATTGGCATACAAAAGAGGAGCTACTGAGATCAAGCAG CATCCTTTCTTCGAAGGCATAAACTGGGCGTTGATTCGTTGTGCAAGCCCACCTGAGATCCCTAAACCGGTTGAGATTGAGCAGATCCCGGTCCCCACAT CTTCAACAACTGTTAAGACGTCTGCTCCTGCTCCTGCTATTGCTGTTAATGCAGATCAGAACAAATATCTGGAATTCGATTTCTTTTAA
AA sequence Show only first row Show all	>Lus10022534 pacid=23166901 polypeptide=Lus10022534 locus=Lus10022534.g ID=Lus10022534.BGIv1.0 annot-version=v1.0 MMMASKPGSRSSPEKPRKPASQAPEANLRKQPSSSQITKTSQPEPAMPIKPSKTTHSIASKIATTATGASKSESSPRLMDGADYLANKVTSGLSFANSTQ IPICADLEGNNSMVSLVSEEKPAENIDISLTSASDGTSSMAKTSGSAKISGRTDFIESGKNSIYRGSTGSDISDESSCSSLSSGVNKPHKANDVRWEAIQ AVRSRDGGLGVSHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKASLTSRKKLLRAQTEREILQCLDHPFLPTLYSHFETDKFSCLVMEYCPGGDLH TLRQRQPGKHFSERAVKFYIAEVLLAMEYLHMLGIVYRDLKPENVLVREDGHPSCVVPTTCFSPRAFFGKSKKEKKLPKTEMGNQVSPLPELIAEPSDAR SMSFVGTHEYLAPEIIKGEGHGSAVDWWTLGIFIYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFSARDLIRGLLVKEPQNRLAYKRGATEIKQ HPFFEGINWALIRCASPPEIPKPVEIEQIPVPTSSTTVKTSAPAPAIAVNADQNKYLEFDFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	0	1
AT1G74160			unknown protein		Lus10017857 [exp]	2.6	0.8561
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	3.2	0.7786
AT1G74160			unknown protein		Lus10034677 [exp]	4.5	0.8139
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	4.9	0.8276
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	7.9	0.7416
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	9.5	0.8073
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	9.8	0.8141
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	11.8	0.8104
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	12.0	0.7882
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	13.3	0.7890

Compare expression of checked genes

Lus10022534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.