Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 84 / 6e-17 Plant protein of unknown function (DUF247) (.1) AT3G50130 74 / 8e-14 Plant protein of unknown function (DUF247) (.1) AT3G50120 73 / 2e-13 Plant protein of unknown function (DUF247) (.1) AT3G50180 73 / 2e-13 Plant protein of unknown function (DUF247) (.1) AT3G50170 67 / 7e-12 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47210 67 / 9e-12 Plant protein of unknown function (DUF247) (.1) AT3G50140 67 / 1e-11 Plant protein of unknown function (DUF247) (.1) AT3G50190 62 / 5e-10 Plant protein of unknown function (DUF247) (.1) AT3G47200 61 / 9e-10 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT4G31980 61 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031159 [exp] 235 / 8e-71 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 195 / 2e-54 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 191 / 4e-53 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 171 / 8e-47 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 121 / 2e-29 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 97 / 5e-21 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 96 / 1e-20 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 91 / 4e-19 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 70 / 3e-12 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337900 [exp] 149 / 6e-39 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 149 / 8e-39 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 146 / 8e-38 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 140 / 2e-35 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 135 / 7e-34 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.009G085300 [exp] 105 / 5e-24 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 104 / 1e-23 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 96 / 9e-21 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 77 / 1e-14 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.007G132300 [exp] 69 / 4e-12 AT2G28580 221 / 1e-65 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10022538 pacid=23166909 polypeptide=Lus10022538 locus=Lus10022538.g ID=Lus10022538.BGIv1.0 annot-version=v1.0 ATGTCCACTCCTCCCTCTAATCTGATCATCAACAAAACTTTCACAGAGCAAGAATGGCTCAAACAAATCACCAATTCCATTCATCTCGGTACGGAAACCA TAACTCAAAACCTCTCTTCCATATTCCAAGTCCCCAATTCCATCTCCGCCGCGAAACCCCAATCCTACGCCCCTCAGCTCGTCGGATTGGGGCCTCTACA CCACTTCCAACGGCGGCTCTACCAGAACGAGCCCATCAAGCTCGCCGGAGCCCAGCTGGCACTCAAGCGGTTCAACGTCCCTGATCTCCCGACGCTGGTC CGCCAAATCTTGCCCCTGCTCCCTAACATCAGACTCTTCTACGACATCCACCTGGACATCTCCGACAATACTCTGGCGTGGCTCCTGGCAATCGACGGAA TGTTCGTCGCCGAGATGCTGTACAACCCTCAATTTCTCTTACCCAGGACGTCCAATTCCTTCAGCTTCTCCGAACGGCTTCACGCCATCACGGGCGACAT TCTGTTAATGGAGAACCAAATTCCGATCTACTCTTTGTTTCCTCGGGAGATTTCGGTGAATTTGGGGAAGATGTTGGAGTCCTTCTGCAAGGTGTTATCG CCTTTCAAGTTGCAGGATTCTTCTGATCATCGTGAATTAAACCCGATAGTTCCCAAGCACTTGCTTGACCATGTGTACCAGCTGATAACACGGGAAACCA GAGCAACTTTAGCAGAGGAGGAAGAGGAGATCTCGGCCGCGGCGGCGGAAAATTCTGTTACCGTTCCCATCAGAAAATTTAAGACTCTGGCCGACAATGT TGCAGAGAAAGTGGACGATGCCAACCAAGACATCGGACCTGCTGTTAGTGTGACCGATGGAATTTTGAAGCTTGCCCAAATTCAGATAAAAAGCCCGATA GGTAGCATCTTCAAGATATTCGACATACTGGGGATCTCCAACTTCGTTAACGAAGCCCTGGATGAAGAAACAACCTTGGTACCTTCCGCCAGGGACCTCA AACGCGTGGGAATCAAATTCTCCGCCACGAAAGACGGCTTGAGAAGAACCGATTTCAACGAATCGGACGCCGTTCTCACCCTCCCTGCATTTTACTTGAA GCCCACCAGCGACCTCCTCATCCGGAACCTAGTAGCCTACGAGTCCCTGGCCAAACCTGACTCCGCCATCCTCACCCGCTACACTGAGATGATGCACGCC TTGCTCAAGGACAAAGACGACGCCAAACTGCTGAGGGAAAACGGAATCGTCGACGGGAATGGCGCCGACGTCGAGGAGACAGTAGTGGGGTTGTTCCGCG GGATGGAAGGTCAACCGGATCCGATGAGCCGGACGGTTATGGACAAGACGATTAGGGAGCTGAACGCGTTCTACATGCGGAAGTCTAAGGTCGTAGCGTC CAAGATTTTCAAATTGATTGCGAAGCTTTTGCTGAGAGTGCTCTTGTTTATCGTTGCGATGGGTCTTCTGGTGATGTTCTCCGTTCAGACTTACTGTAGT GTATATGTTTGCGGCGGTGCGGCGGCGGGTGGCGGTGGTGGGTGGTTCGGAAATGGGTCCCTAAATTTGCCGGTGGGAGATAGTGGCGGGGTCTCTTCTT TGTAG
AA sequence Show only first row Show all	>Lus10022538 pacid=23166909 polypeptide=Lus10022538 locus=Lus10022538.g ID=Lus10022538.BGIv1.0 annot-version=v1.0 MSTPPSNLIINKTFTEQEWLKQITNSIHLGTETITQNLSSIFQVPNSISAAKPQSYAPQLVGLGPLHHFQRRLYQNEPIKLAGAQLALKRFNVPDLPTLV RQILPLLPNIRLFYDIHLDISDNTLAWLLAIDGMFVAEMLYNPQFLLPRTSNSFSFSERLHAITGDILLMENQIPIYSLFPREISVNLGKMLESFCKVLS PFKLQDSSDHRELNPIVPKHLLDHVYQLITRETRATLAEEEEEISAAAAENSVTVPIRKFKTLADNVAEKVDDANQDIGPAVSVTDGILKLAQIQIKSPI GSIFKIFDILGISNFVNEALDEETTLVPSARDLKRVGIKFSATKDGLRRTDFNESDAVLTLPAFYLKPTSDLLIRNLVAYESLAKPDSAILTRYTEMMHA LLKDKDDAKLLRENGIVDGNGADVEETVVGLFRGMEGQPDPMSRTVMDKTIRELNAFYMRKSKVVASKIFKLIAKLLLRVLLFIVAMGLLVMFSVQTYCS VYVCGGAAAGGGGGWFGNGSLNLPVGDSGGVSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	0	1
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	2.4	0.7711
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10012595 [exp]	4.9	0.7017
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	6.2	0.7569
AT5G42860			unknown protein		Lus10009749 [exp]	10.0	0.7609
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	12.0	0.7192
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	15.5	0.7211
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	18.5	0.7135
AT3G52710			unknown protein		Lus10014206 [exp]	21.6	0.7231
AT5G10660			calmodulin-binding protein-rel...		Lus10026227 [exp]	26.8	0.6757
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	41.8	0.6862

Compare expression of checked genes

Lus10022538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.