Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 1029 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 1009 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT1G09930 777 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G10770 757 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 756 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G64410 752 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53520 739 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G16370 723 / 0 ATOPT3 oligopeptide transporter (.1) AT5G53510 715 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022543 [exp] 1152 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1142 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1118 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 1115 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 1095 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1086 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 1067 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 1061 / 0 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 1039 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370100 [exp] 1046 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 1044 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 997 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 881 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.007G056900 [exp] 795 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.003G145500 [exp] 788 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019500 [exp] 763 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.002G109300 [exp] 761 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.009G079500 [exp] 761 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.012G019700 [exp] 753 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022541 pacid=23166903 polypeptide=Lus10022541 locus=Lus10022541.g ID=Lus10022541.BGIv1.0 annot-version=v1.0 ATGATCATAACTAAGTTTGTTTTTACAGGGGAAGAAGAAGTGAACGACAGCCCAATAGAGCAAGTGAGGCTGACAGTTCCAATCACCGACGACCCAACGT TGCCGGCGCTAACTTTCCGAACATGGGTTCTGGGGATAAGTTCATGTGTATTCCTGGCTTTTCTCAACCAGTTCTTCGGCTACCGTTCAAATGCTCTGTC CATCACCTCTGTTTCAGCTCAGATTCTGGTGCTTCCACTCGGGAAACTGATGGCAGCCTCTCTTCCAACAACCCGAGTCAAACTCCCTCTCACAAACTGG TCATTTTCACTGAATTCAGGTCCCTTCAATCTGAAAGAACATGTTTTGATCACCATATTTGCCAACTGTGGAGCCGGAGGTATTATGGCTCTTGGAATTG TTACTGCTGTTAAGGCCTTCTACCACAGAAAAATACACATTATGGCAGCTTTCCTCCTCGTCCAGACTACTCAGTTGCTTGGGTATGGATGGGCTGGAAT GTTCAGAAAAATTCTCGTTGATTCTCCTCATATGTGGTGGCCTTCAAACTTGGTCCAAGTCTCTCTCTTCAGGGCGTTGCATGACAAGGAGAAGAGACTG AGAGGAGGACAAACAAGGCTTCAATTTTTCACCCTGGTGTTTTTATCAAGCTTTGCTTATTACGTAGTACCCAGCTACTTGTTCCCTTCAATATCAACGC TTTCATTCATGTGTTGGATATGGAAGAACTCCATCACTGGGCAACAGCTTGGTTCAGGTCTGAATGGACTTGGGATTGGTTCCTTTGGTCTCGATTGGTC AACTGTAGCTGGTTTCTTGGGGAGCCCCTTAGCCACCCCTTTGTTTGCCATCCTCAATACCATGGCTGGTTTCTTATTGTTCGTATATATCATCATGCCG ATTGCTTACTGGAACAACGCTTTCAGTTCCAGGAGGTTCCCTATGATTTCTCAGCAGACTTTTGACAGTTCTGGACAAGTCTACAACATTTCCAAGATAT TGAACCAAAGAGAGTTCGACATCAACCTTGTGGAGTACGAAGGTTACAGCAAGCTGTACCTTAGTGTTACGTTTGCGTTTGTGTATGGGTTCAGTTTTGC AGCTCTGGTGTCCACTGTTACCCATGTTGCCCTTTTTCATGGAAAATCAATTTGGGAACTGTGGAAGAAGACAGCAGTTGGAAACAAAGGCAAACAGCAG TCGGATGTTCACACGAGATTGATGAAGAAGAACTACGAAAGTGTTCCTCAATGGTGGTTCTTAGCAATCGCTGCTGTTTCATTTGCACTGTCTCTCTTCA CCATTGAAGGATTTGGTGGACAGTTGCAACTTCCATGGTGGGCACTTGTTTTGGCTTGTGGTATCTCCCTTGTCTTCACCTTGCCAATTGGGATTGTTCA GGCTACCACTAATCAGCAAATGGGGATAAATGTGATAACAGAGTTGATAATTGGATACATGTACCCAGGAAAGCCACTAGCGAATGTGGCATTTAAGGCA TATGGTTACATCAGCATGTCACAAGCTCTAGGTTTCTTAGCAGACTTCAAATTAGGACATTATATGAAAATCCCACCAAAATCAATGTTCTTGGTGCAGA CAGTAGGGACAATTGTTGCATCGTCCGTCCGGTTCGCAACAACATGGTGGCTTCTATCAAGCGTTGACCACATCTGCGACACGACGAAGCTACCAAAGGG AAGTCCATGGACATGTCCAGGTGACAGCATCTTCTACAACGCTTCAATCATATGGGGAGTCATAGGCCCACTGAGGATCTTCAACGTTAAAGGCAACTAC GCCAAGATGAACTGGTTCTTCGTAATCGGGATCCTGGCACCGGTTCCGGTCTGGCTCTTGTCCCGCAAGTACCCGGAGAAGAAATGGATTGCAAAGATTC ACATCCCGATATTCATATCCGGGATGGGGGGTTTGCTGCCGGCAAAGCCAGTTCACTACTTGTCATGGGGAGCAGTGGGGATTTTCTTCAACTACTACGT GTACAGGAAGTACAAAGGATGGTGGGCTAGGCATACTTATATTATGTCGGCGGCATTGGATGCTGGGGTGGCTTTCATGGCTGTGATGATATACTTTACT CTTCAGAACAAGAACATATATGGGCCGCAATGGTGGGGATTACAAGCTGATGATCACTGTCCTTTAGCTAAATGCCCTACTGTTTCTGGGATTGTGGTGG ATGGATGTCCTGCCATTCATTGA
AA sequence Show only first row Show all	>Lus10022541 pacid=23166903 polypeptide=Lus10022541 locus=Lus10022541.g ID=Lus10022541.BGIv1.0 annot-version=v1.0 MIITKFVFTGEEEVNDSPIEQVRLTVPITDDPTLPALTFRTWVLGISSCVFLAFLNQFFGYRSNALSITSVSAQILVLPLGKLMAASLPTTRVKLPLTNW SFSLNSGPFNLKEHVLITIFANCGAGGIMALGIVTAVKAFYHRKIHIMAAFLLVQTTQLLGYGWAGMFRKILVDSPHMWWPSNLVQVSLFRALHDKEKRL RGGQTRLQFFTLVFLSSFAYYVVPSYLFPSISTLSFMCWIWKNSITGQQLGSGLNGLGIGSFGLDWSTVAGFLGSPLATPLFAILNTMAGFLLFVYIIMP IAYWNNAFSSRRFPMISQQTFDSSGQVYNISKILNQREFDINLVEYEGYSKLYLSVTFAFVYGFSFAALVSTVTHVALFHGKSIWELWKKTAVGNKGKQQ SDVHTRLMKKNYESVPQWWFLAIAAVSFALSLFTIEGFGGQLQLPWWALVLACGISLVFTLPIGIVQATTNQQMGINVITELIIGYMYPGKPLANVAFKA YGYISMSQALGFLADFKLGHYMKIPPKSMFLVQTVGTIVASSVRFATTWWLLSSVDHICDTTKLPKGSPWTCPGDSIFYNASIIWGVIGPLRIFNVKGNY AKMNWFFVIGILAPVPVWLLSRKYPEKKWIAKIHIPIFISGMGGLLPAKPVHYLSWGAVGIFFNYYVYRKYKGWWARHTYIMSAALDAGVAFMAVMIYFT LQNKNIYGPQWWGLQADDHCPLAKCPTVSGIVVDGCPAIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	0	1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	2.8	0.9235
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	2.8	0.9067
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10023519 [exp]	3.6	0.8908
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	7.3	0.9105
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017974 [exp]	7.6	0.9145
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	7.9	0.8811
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	8.8	0.9017
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	12.0	0.9066
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	12.3	0.9016
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	13.1	0.8851

Compare expression of checked genes

Lus10022541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.