Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19010 182 / 7e-54 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 123 / 2e-32 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 117 / 4e-30 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 113 / 2e-28 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 112 / 2e-28 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 105 / 4e-26 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 102 / 1e-24 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 85 / 1e-18 4CL5 4-coumarate:CoA ligase 5 (.1) AT5G63380 83 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 75 / 4e-15 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016630 [exp] 315 / 3e-106 AT4G19010 532 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 128 / 2e-33 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 125 / 2e-32 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 123 / 6e-32 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 111 / 8e-28 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 111 / 1e-27 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 111 / 1e-27 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 109 / 5e-27 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 108 / 7e-27 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099700 [exp] 213 / 2e-65 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 127 / 1e-33 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 126 / 4e-33 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 120 / 7e-31 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 117 / 6e-30 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 102 / 1e-24 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 96 / 2e-22 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 86 / 4e-19 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 86 / 5e-19 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 79 / 1e-16 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10022542 pacid=23166884 polypeptide=Lus10022542 locus=Lus10022542.g ID=Lus10022542.BGIv1.0 annot-version=v1.0 ATGCCGCCGTCTCTCTCCCCTCCGACACTGACCTCGACCTCGTTTCCTTCCTTTTCTCCCACCACCCTCACCGCCGCCCTCCTCGATTCCGCAACTTCAC ACTCTATCTCTTACAATGAACTCTTCCCCCCTCGTCAAATCCGTGGCCTCTTCTCTCCACAAATCAGCCTCCTCAAAGGCTACGTCGTCTTGTTCCTCCT CCCCAATTCTATTTACTTCCCCGTGATCTTCTTCGCCGTCCTCTACATTGGCGGCGTTGTCACCACCATGAACCCTCTCGCTACCGTCCCGGAAATCCAG AGCCGCATTGCCGATTGCGGCGCCTCTTTGGCTTTCGCTTCTCTCGGTAGAGATTCTGATTTTGGGATCCCATGCATTGCCGTCCCAGAATTGAGCTCAT CTACTTGTACTGATGATTCTGGTTATGATTTCTCCACATTTGGTGATTTCCACCACATGATTACTTGCGATGCTGTCGAATTGGGATTTCGACCGCCGAT ACGGCAGCAGGACACGGCGGCGATAATGTATTCTTCTGGAACCACTGGAGCCAGCAAGGGCGCTATAATAACCGACGGGAAGTTGATTGCTGCCGCGGAA CTATTTGTGAGGTTCGAGGCTTCCATGTATGATTCCCCAGCCTGGGAGAATGTCTATTTGGCAGTGTTGCCCATATTCCACATATACGGGCTCGTCTTGT TCGTCACCGGCCTACTGTCGCTGGGATCCACCATTGTTGTGATGAAGAAATTTGATGCTGATTAA
AA sequence Show only first row Show all	>Lus10022542 pacid=23166884 polypeptide=Lus10022542 locus=Lus10022542.g ID=Lus10022542.BGIv1.0 annot-version=v1.0 MPPSLSPPTLTSTSFPSFSPTTLTAALLDSATSHSISYNELFPPRQIRGLFSPQISLLKGYVVLFLLPNSIYFPVIFFAVLYIGGVVTTMNPLATVPEIQ SRIADCGASLAFASLGRDSDFGIPCIAVPELSSSTCTDDSGYDFSTFGDFHHMITCDAVELGFRPPIRQQDTAAIMYSSGTTGASKGAIITDGKLIAAAE LFVRFEASMYDSPAWENVYLAVLPIFHIYGLVLFVTGLLSLGSTIVVMKKFDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	0	1
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	9.5	0.7598
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	9.7	0.8100
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	12.4	0.8005
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	13.9	0.8044
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	14.5	0.7873
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	14.5	0.7781
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	17.9	0.7827
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	20.1	0.7949
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	20.8	0.7442
AT5G21140		EMB1379	embryo defective 1379 (.1)		Lus10019555 [exp]	29.7	0.7251

Compare expression of checked genes

Lus10022542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.