Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 1051 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 1046 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 808 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 808 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 773 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G27730 767 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 766 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 739 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 735 / 0 ATOPT3 oligopeptide transporter (.1) AT4G19010 165 / 9e-43 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016632 [exp] 1339 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1177 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1170 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 1166 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1156 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1109 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 1081 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 1054 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 1042 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1142 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1134 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 1028 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 913 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 829 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 820 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.009G079500 [exp] 793 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 793 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.012G019700 [exp] 790 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 788 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0378 [flax] [poplar] PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022543 pacid=23166944 polypeptide=Lus10022543 locus=Lus10022543.g ID=Lus10022543.BGIv1.0 annot-version=v1.0 ATGACAAAGTCAACGGCGGTCGGAACTCGAGGGTTCAATACGCAGAGACTTCACAAGTACTCTTCAGTTGGACTGTTGGCCCCAAACACAGAATCAAAAG TAGTTGATTGTGTAAGTGGTCGCGCTCTTCCTCCGGGCAGTGTTGGGGAGCTCTGGATGAGGGGACCAGGCACCATGAAAGGCTACTTGAACAATCCAGA GACAAGTGTTGAGACAGTTGACAAAGAAGGTTGGCTTCATACAGGAGACATTGTTTGCTTTGACGATGATGGTTACTTATACATCTTTGATCGGTTAAAA GAGATGATCAAGTACAAGGGTTTCCAGCTAGCGTACAGTGCACACACAGTGTCATTGTGTGGAATCTGGATCAGTATAAATGGGGTCAATCAAACATCCT TTTCTTCTCCACTTCTCTCTTGGACAAGTGGGCTTCACTGTCCCCGTGACCTCTATATTGTCTTGTTTTCTCCATCCATCCATCCATCCATCCATCCATC CATAATTGACGTGATTTTGGGGAACTGTGATGTTACTTGCTTAAATAAACATCCAACCCAGCTGTTTGCTTTAGTATCTCCACAAGGCAACCAACCAGAC ATGGGAAGCTTAGCTGAAAATGGGGCGCCTCCAATTCCAGACTCTACCATTCCTCCCGAGAGCTCCTCCGCTTTTGAAATGGGAAAACTAGGGGAAGGAG GGGAAGAAGAAGTGAACGACAGCCCAATTGAGCAAGTGAGGCTTACGGTTCCAATAACCGACGACCCGACACAGCCAACCATAACCATAAGAACGTGGGT TTTGGGGATACTATCATGTTCGCTTTTGGCTTTCGTGAACCAGTTCTTCGGCTACCGGTCCAACCAGCTGTACGTGAGCTCTGTCGCAGCTCAAATTGTG GTTCTCCCTCTGGGAAAATTCATGGCTGCTGCTATTCCGAGTATAGTGATTCGAGTTCCGTTGACCAAATGGTCGTTTTCGTTGAATCCGGGGCCGTTCA ATTTGAAAGAACATGTTCTGATTACCATATTTGCAAACTGTGGAGCCGGCGGAGTTTATGCAGTAGCCATTATCACAGCAGTCAGGGCATTTTATCACAG GGGTATCCATCCGGTCGCTGCTATGTTGCTGGTTCAAACCACCCAGTTGCTTGGGTATGGATGGGCTGGGATGTTCAGAAAGTATCTGGTGGATTCACCT TATATGTGGTGGCCTTCCAATCTGGTCCAAGTCTCTCTTTTCAGGGCGCTCCACGAGAAGGAAAAGAGAGCAAGAGGAGGAAAAAGCAGGCTGCAATTCT TCACAATAGTATTCATCTCCAGCTTTGCATACTACGTCGTCCCAAGCTACTTGTTCCCATCACTCTCAACGCTTTCATTCATTTGTTGGATATGGAAGGA CTCCATTACAGCACAACAGATTGGTTCAGGACTAAGAGGACTCGGCGTGGGCTCATTTGGCCTTGACTGGTCAACTGTTGCTGGCTTCTTAGGGAGTCCT CTGGCCACACCTCTCTTTGCAATCATCAACACTTTAGCTGGGTTTTTCTTGGTTGTTTATGTCATCATCCCCATTGCTTATTGGAACAACGCTTTTGAAG CTAAGAGGTTCCCAATCTTCTCCCAACACACGTTCGACAGTGGTGGCCAAATTTACAACATCACCCGGGTGTTGAACGACAAGAGCTTTGGGATTGATCA TACCGCTTATGAGAACTACAGCAGGCTGTATCTCAGCGTTACCTTTGCGTTTGTTTATGGGATGAGCTTTGCTGCTCTTATGGCTACCATTTCCCACGTT GCTCTCTTCGATGGCAAAACAATTTGGGAAATGTGGAAGAAGACAACTGGTGCCATGAAAGAGCAGTACACAGATGTCCACACAAGGCTGATGAAGAAGA ACTATGAAGCTGTTCCACAATGGTGGTTCATGACCATCTTGGTTATATCTCTGGCCCTTGCATTTCTTGCTGTCGAAGGTTTTAACAAGCAGCTGCAACT TCCTTGGTGGGGACTCCTCTTAGCTTGTGGAATTGCCTTGTTCTTCACTTTGCCAATTGGTATCATTCAAGCTACAACCAATCAGCAAATGGGATTGAAT GTCATCACAGAGCTTATCATAGGATACATGTACCCCGGTCGACCTCTGGCCAATGTAGCTTTCAAAACTTATGGGTACATTAGTATGGCACAAGCTCTAG GCTTTTTACAAGACTTCAAACTGGGCCATTACATGAAAATCCCTCCCAAAGTCATGTTCCTAGTCCAGACAGTGGGAACAATAGTGGCTTCAACTGTCTA TTTTGCAACATCATGGTGGCTCCTCTCAGACATCAAAGACATCTGTAACCCAGATAGGTTACCCAAGGGAAGTCCGTGGACATGCCCTGGAGATGATGTT TTCTACAGTGCTTCAATTATATGGGGAGTCATAGGACCTCTGAGAATGTTCACAGACAGTGGAAATTACCCTCAAATGAACTGGTTCTTCCTTGTTGGTC TACTGGCTCCGGTCCCCGTATGGCTCCTGTGGCGAAAATACCCCGAGCAGAAATGGATAAGGCTGATTCATATGCCATTGATTTTTGCAGCAACAGCAAA TATGCCACCAGCTAAGCCAGTTCATTACCTGTCATGGGGAACAGTTGGGATATTGTTCAACTTTTATATCTACAGAAAGTACAAAGGATGGTGGGCTAGG CATACTTACATATTGTCAGCTGCAATGGATGCTGGTGTTGCTTTCTTGGGGATACTCATCTATTTCACTCTTCAGAGTAAGGATATTTATGGAGCAGAGT GGTGGGGATTGCAAGCTGATGATCACTGTCCCTTGGCAAGCTGTCCTACTGCTCCTGGTATTCAAGTTGATGGTTGCCCTCTCATTCAATGA
AA sequence Show only first row Show all	>Lus10022543 pacid=23166944 polypeptide=Lus10022543 locus=Lus10022543.g ID=Lus10022543.BGIv1.0 annot-version=v1.0 MTKSTAVGTRGFNTQRLHKYSSVGLLAPNTESKVVDCVSGRALPPGSVGELWMRGPGTMKGYLNNPETSVETVDKEGWLHTGDIVCFDDDGYLYIFDRLK EMIKYKGFQLAYSAHTVSLCGIWISINGVNQTSFSSPLLSWTSGLHCPRDLYIVLFSPSIHPSIHPSIIDVILGNCDVTCLNKHPTQLFALVSPQGNQPD MGSLAENGAPPIPDSTIPPESSSAFEMGKLGEGGEEEVNDSPIEQVRLTVPITDDPTQPTITIRTWVLGILSCSLLAFVNQFFGYRSNQLYVSSVAAQIV VLPLGKFMAAAIPSIVIRVPLTKWSFSLNPGPFNLKEHVLITIFANCGAGGVYAVAIITAVRAFYHRGIHPVAAMLLVQTTQLLGYGWAGMFRKYLVDSP YMWWPSNLVQVSLFRALHEKEKRARGGKSRLQFFTIVFISSFAYYVVPSYLFPSLSTLSFICWIWKDSITAQQIGSGLRGLGVGSFGLDWSTVAGFLGSP LATPLFAIINTLAGFFLVVYVIIPIAYWNNAFEAKRFPIFSQHTFDSGGQIYNITRVLNDKSFGIDHTAYENYSRLYLSVTFAFVYGMSFAALMATISHV ALFDGKTIWEMWKKTTGAMKEQYTDVHTRLMKKNYEAVPQWWFMTILVISLALAFLAVEGFNKQLQLPWWGLLLACGIALFFTLPIGIIQATTNQQMGLN VITELIIGYMYPGRPLANVAFKTYGYISMAQALGFLQDFKLGHYMKIPPKVMFLVQTVGTIVASTVYFATSWWLLSDIKDICNPDRLPKGSPWTCPGDDV FYSASIIWGVIGPLRMFTDSGNYPQMNWFFLVGLLAPVPVWLLWRKYPEQKWIRLIHMPLIFAATANMPPAKPVHYLSWGTVGILFNFYIYRKYKGWWAR HTYILSAAMDAGVAFLGILIYFTLQSKDIYGAEWWGLQADDHCPLASCPTAPGIQVDGCPLIQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022543 [exp]	0	1
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	3.0	0.8378
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	5.5	0.7893
AT3G44240			Polynucleotidyl transferase, r...		Lus10038113 [exp]	5.6	0.7197
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	9.6	0.7767
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	14.9	0.7815
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	16.4	0.7603
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	17.9	0.7720
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	19.7	0.7704
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	20.4	0.7195
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	20.5	0.7557

Compare expression of checked genes

Lus10022543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.