Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 1001 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 993 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 755 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 739 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G53520 736 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 721 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G64410 715 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 708 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 703 / 0 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016633 [exp] 1415 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1243 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1139 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1068 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 1029 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 1016 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 999 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 972 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 961 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1069 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1055 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 977 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 868 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 777 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 768 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 751 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 743 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 734 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 729 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022544 pacid=23166935 polypeptide=Lus10022544 locus=Lus10022544.g ID=Lus10022544.BGIv1.0 annot-version=v1.0 ATGGGCATGACAGATGAGAATATCAAAGGGTATGATGATGATGACCAACATCTTCCCAAGTCCACCACTGGACATTTCCAGATTGAAAAAACAGATGAAG AAGAGGAGAACGACAACCCAATCGAGCAAGTCAGGATGACGGTTCCGATCACAGACGACCCTACACAACCGACGTTGACATTCAGGACATGGGTTCTGGG GATAACCTCATGTGCGCTTCTGGCTTTTGTGAACCAGTTCTTTGGGTATCGCACCAACCAGTTGTCGGTCAGCTCGGTCACTGCTCAGATTCTGGTGCTG CCAGTTGGAAAGCTGATGGCTGCTACTCTTCCTAAGCATTCAGTTCGAGTCCCGCTAACAAAGTGGTCCTTCTCGTTGAATCCGGGGCCGTTTAACTTGA AAGAACATGTTCTGATCACCATATTCGCCAACTGTGGATCCGGAGGTGTTTATGCTGTTCATATCATTACTTCAGTGAAAGCTCTGTACCATGCCACCAT TAGCCCTATCCCTGCCATGTTGCTCGTACAGACCACTCAGTTGCTTGGGTATGGATGGGCAGGTATTTTCAGGAAATTTCTAGTGGATTCACCTTACATG TGGTGGCCTGCAAATTTGGTTCAAGTTTCTCTCTTCAGGGCTTTGCATGAGAAAGACAAGAGAATAAACGGAGGACAAACCAGGCTACAATTTTTCACCC TGGTTTTCGTATGCAGCTTTGCTTACTACGTCATACCAGGCTACCTCTTTCCATCCCTGTCAACCATTTCAATTTTGTGCTTGATCTGGAAGAACTCTGT CAAAGCACAACAGATTGGCTCGGGATTTAGTGGCCTTGGAATTGGTTCATTTGGCCTGGATTGGTCTACTGTTGCATCCTTCCTGGGAACTCCTTTAGCC TCACCATTGTTTGCCATTTTAAACACCTTGACTGGTTTCTTCTTCATTATCTACATTGTTGTCCCAATTGCTTATTGGAATAATGCCTACGATGCCAAGA AATTTCCCATCTTTTCCCAGAAGACTTTTGATAGTACAGGAGCACACTACGACATCGACAGGATTCTGAACAAGCAGACATTTGAGATTGATTATCCTGC CTATAATGGCTACAGCAAACTCTATCTCAGTGTCACCTTTGCCTTTGTGTATGGCATGACTTTTGCTGCTCTCATGGCTACCATTGTACATGTTGCCTTG TTTGATGGCAAAACAATATGGAAGCTTTGGAAGAAGACTACAGGTGCAGTCAAGGATCGTTACTCTGATGTGCATACAAGGCTAATGAAGAAGAACTATG AAGCAGTACCTGAATGGTGGTTCTTGATTATACTGGCTATTTCTTTTGCTCTTGCTCTTCTTGCAGTTGAGGGTTTTGGCAAACAGCTTCAGCTTCCATG GTGGGGGCTCATCTTGGCTTGCCTTATTGCCCTTACCTTCACATTACCAATTGGGATCATTCAAGCCACCACAAATCAGCAAATAGGGCTAAATGTGATC ACAGAGTTGATAATAGGATACATGTACCCTGGGAAACCCTTGGCAAACGTGGCTTTCAAGACTTATGGATACATCAGCATGGCACAAGCACTAGGATTCC TGGGTGACTTCAAACTAGGCCATTACATGAAAATCCCTCCTAAAGTAATGTTTCTGGTCCAGACAGTTGGAACACTAGTGTCGTCAACAGTCTACTTTGC GACATCCTGGTGGCTGCTGTCAACAGTGAAAAACATATGTGATCCAGACGCACTCCCCCCTGGGAGTCCATGGACTTGCCCAGGAGACAGTGTGTTCTAC AGTGCCTCAATCATATGGGGAGTAATTGGACCTCTAAGAATGTTCACTAAGAAGGGAATCTACCCAGAGATGAACTGGTTCTTCCTCATAGGAGCATTGG CACCCGTCCCTGTTTGGTTGCTTGCTAGGAAATACCCGCAGAAGAAATGGATAAAGATGATCCATATGCCCCTCATATTTGCGGCTACTAACAGTATGCC GCCGGCTAGACCAGTTCACTTCTGGACATGGGGAGCAGTGGGGATATTCTTCAACTACTACGTCTACAACAAGTACAAAGGATGGTGGGCTAGACACACT TACATTATGTCGGCTGCCTTGGATGCTGGGGTTGCGTTTCTGGCTGTTTTGCTCTTCTTTCTTCTGCAGAACAAGAACATCAATGGTCCTGCTTGGTGGG GATTGGAACAAAGTGATCATTGTTTGTTATCGAGTTGTCCTACTGCCCCTGGAGTTGTTGTCCATGGTTGCCCTGTCGTTTCTTGA
AA sequence Show only first row Show all	>Lus10022544 pacid=23166935 polypeptide=Lus10022544 locus=Lus10022544.g ID=Lus10022544.BGIv1.0 annot-version=v1.0 MGMTDENIKGYDDDDQHLPKSTTGHFQIEKTDEEEENDNPIEQVRMTVPITDDPTQPTLTFRTWVLGITSCALLAFVNQFFGYRTNQLSVSSVTAQILVL PVGKLMAATLPKHSVRVPLTKWSFSLNPGPFNLKEHVLITIFANCGSGGVYAVHIITSVKALYHATISPIPAMLLVQTTQLLGYGWAGIFRKFLVDSPYM WWPANLVQVSLFRALHEKDKRINGGQTRLQFFTLVFVCSFAYYVIPGYLFPSLSTISILCLIWKNSVKAQQIGSGFSGLGIGSFGLDWSTVASFLGTPLA SPLFAILNTLTGFFFIIYIVVPIAYWNNAYDAKKFPIFSQKTFDSTGAHYDIDRILNKQTFEIDYPAYNGYSKLYLSVTFAFVYGMTFAALMATIVHVAL FDGKTIWKLWKKTTGAVKDRYSDVHTRLMKKNYEAVPEWWFLIILAISFALALLAVEGFGKQLQLPWWGLILACLIALTFTLPIGIIQATTNQQIGLNVI TELIIGYMYPGKPLANVAFKTYGYISMAQALGFLGDFKLGHYMKIPPKVMFLVQTVGTLVSSTVYFATSWWLLSTVKNICDPDALPPGSPWTCPGDSVFY SASIIWGVIGPLRMFTKKGIYPEMNWFFLIGALAPVPVWLLARKYPQKKWIKMIHMPLIFAATNSMPPARPVHFWTWGAVGIFFNYYVYNKYKGWWARHT YIMSAALDAGVAFLAVLLFFLLQNKNINGPAWWGLEQSDHCLLSSCPTAPGVVVHGCPVVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022544 [exp]	0	1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	9.5	0.8899
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	11.1	0.8545
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016633 [exp]	14.7	0.8753
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	23.1	0.8487
AT5G22400			Rho GTPase activating protein ...		Lus10004864 [exp]	24.2	0.8350
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	24.9	0.7510
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	32.2	0.8469
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	40.1	0.8478
AT1G07120			unknown protein		Lus10031293 [exp]	40.8	0.8067
AT2G40120			Protein kinase superfamily pro...		Lus10040203 [exp]	44.7	0.8294

Compare expression of checked genes

Lus10022544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.