Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17190 422 / 2e-148 FPS2 farnesyl diphosphate synthase 2 (.1.2) AT5G47770 423 / 3e-148 FPS1 farnesyl diphosphate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006168 [exp] 433 / 8e-153 AT5G47770 575 / 0.0 farnesyl diphosphate synthase 1 (.1) Lus10041057 [exp] 431 / 5e-152 AT5G47770 565 / 0.0 farnesyl diphosphate synthase 1 (.1) Lus10033582 [exp] 47 / 6e-06 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 47 / 1e-05 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003400 [exp] 437 / 2e-154 AT5G47770 588 / 0.0 farnesyl diphosphate synthase 1 (.1) Potri.016G004100 [exp] 115 / 1e-31 AT5G47770 174 / 2e-54 farnesyl diphosphate synthase 1 (.1) Potri.004G090600 [exp] 52 / 3e-07 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 46 / 2e-05 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 43 / 0.0002 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10022545 pacid=23166881 polypeptide=Lus10022545 locus=Lus10022545.g ID=Lus10022545.BGIv1.0 annot-version=v1.0 ATGGCGGAGGATGCAAAATCCAAGTTCCTCCAAGTCTATTCAATCTTGAAAGCGCAGCTTCTCGACGACCCTGCTTTTGAATTCGATGCCGTGTCTAGGC AATGGCTCGATCATATGATGGACTACAATATACCTAGAGGCAAGCTAGTCCGAGGACTGTCTGTTCTAGGTTGCTACAAGACGCTGAGGGAAGGGGAAGA ATTAACTGAAGATGAAATCTTCCTTGCTTGCGTACTCGGTTGGTGCATTGAATGGTTTCAAGGATGTGCTCTTATTGTCGACGACATTGTTGATAACTCT CATATGCGTCGAGGACAACCTTGCTGGTACAGAGTACCTAAGGTTGGGATGATTGCTTTAAATGATGCACTAGTTCTCCGCAACCATATTGCCAGGATGT TGAAGCGCTACTTCAAGAATAAGCCTTACTATGTTGATCTGGTTGAGTTGTTCAGTGAGGTTGAGTTCCTATCAGTCTGTGGACAGATGATCGATTTAAT AACTACAAACGAAAAGGATCTAGCTAATTACTCTTTGACGCTATATAACCGAATTTCAGAGTACAAAAGCGCTTATTACTCACTTTATCTACCAGTTGCA TGTGCATTGATCTTGGCAGGGGAGAATATCGAAGACCATTCAGAAGTGAAGGAAATCCTTGTGGAAATAACTGCCTACTTTCAGATACAGAATGATTATC TCGATTGCTATGGAGATCCCAACGTTACTGGCAAGGTAGGAACAGACATTGAAGACCACAAGTGCTCGTGGCTTGTTGTCAAAGCAGTCGAACTTGCTAA CGAGGAACAAAAGACACTGTTGCAAGAAAACTATGGGAAACAGGATCCAGCCTGCGTAGCGAGGGTGAAAGAACTTTTTGACCTTCTTGATCTTCAGAGT GTGTATTCAGAGTACGAGAAGAAGACATACAAGAAGCTGACCAAATGGGCTGAAAGCCACCCAAGCAAAGTGGTGAAAGGACTATGTAGGAGATATGCTG AAGGATATGTTGAAGCTGAGAGGAGAGTTGCTCATGTCTCTAAGTAA
AA sequence Show only first row Show all	>Lus10022545 pacid=23166881 polypeptide=Lus10022545 locus=Lus10022545.g ID=Lus10022545.BGIv1.0 annot-version=v1.0 MAEDAKSKFLQVYSILKAQLLDDPAFEFDAVSRQWLDHMMDYNIPRGKLVRGLSVLGCYKTLREGEELTEDEIFLACVLGWCIEWFQGCALIVDDIVDNS HMRRGQPCWYRVPKVGMIALNDALVLRNHIARMLKRYFKNKPYYVDLVELFSEVEFLSVCGQMIDLITTNEKDLANYSLTLYNRISEYKSAYYSLYLPVA CALILAGENIEDHSEVKEILVEITAYFQIQNDYLDCYGDPNVTGKVGTDIEDHKCSWLVVKAVELANEEQKTLLQENYGKQDPACVARVKELFDLLDLQS VYSEYEKKTYKKLTKWAESHPSKVVKGLCRRYAEGYVEAERRVAHVSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	0	1
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	1.0	0.9169
AT5G17620			unknown protein		Lus10013643 [exp]	1.4	0.9105
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	3.6	0.8763
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	3.7	0.8841
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	4.9	0.8766
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	5.7	0.8620
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	5.7	0.8730
AT1G12650			unknown protein		Lus10017837 [exp]	6.3	0.8794
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	6.6	0.8528
AT5G63000			Mitochondrial import inner mem...		Lus10027691 [exp]	7.7	0.8373

Compare expression of checked genes

Lus10022545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.