Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13980 376 / 2e-126 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT1G32330 165 / 4e-45 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 162 / 6e-44 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G02990 160 / 1e-43 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT4G18880 157 / 4e-43 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT5G16820 157 / 2e-42 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT2G26150 144 / 8e-39 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 139 / 1e-36 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G45710 134 / 5e-35 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2) AT3G24520 132 / 2e-34 HSF AT-HSFC1 heat shock transcription factor C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016634 [exp] 840 / 0 AT4G13980 446 / 5e-154 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10030956 [exp] 176 / 2e-49 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 174 / 2e-48 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10000312 [exp] 172 / 7e-48 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 171 / 1e-47 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10029269 [exp] 165 / 2e-47 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10007318 [exp] 167 / 1e-46 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10005420 [exp] 167 / 1e-45 AT4G18880 348 / 1e-116 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10015237 [exp] 161 / 2e-44 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320900 [exp] 477 / 2e-165 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.017G059600 [exp] 466 / 2e-161 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.013G079800 [exp] 177 / 9e-50 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.004G062300 [exp] 174 / 2e-49 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 174 / 6e-49 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.001G138900 [exp] 172 / 8e-48 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.011G071700 [exp] 167 / 7e-47 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.003G095000 [exp] 170 / 8e-47 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.005G214800 [exp] 157 / 1e-43 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 152 / 1e-41 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10022546 pacid=23166946 polypeptide=Lus10022546 locus=Lus10022546.g ID=Lus10022546.BGIv1.0 annot-version=v1.0 ATGGAGTCCGCTATACCTACCTCGACGACGGCCGCCGGTGGAGGAGGAGGAGTAGGTACGGCTCCTTTCCTGATAAAGACGTATGACATGGTGGATGACA TGTCCACCGACGACATCGTGTCCTGGAGCTCCTCCAACAACAGCTTCGTCGTCTGGGATCCTCCCGAATTCGCCCGACGCCTCCTTACTGCATTCGCCCG ACGCCTTCTTCCTGCCTACTTCAAGCACAACAATTTCTCCAGCTTCATCCGCCAATTGAACACTTATGGATTCAGGAAGAGCGATCCCGAGAGATGGGAG TTCTCCAATGAAGAGTTTATCAAAGGTCAGAAGCATCTCCTGAAAAATATCCATAGACGGAAGCCAATTCACAGCCACAGTCATCCACAAGTTTCTTCAG ATCCTGAAAGAGCAGCATTTGATGAAGAGATCGAGAGGCTCTCCCGCGAGAAGGCTCAGCTTCAGGCTAGTCTTGTAAGGTGCGAGAAGGAGAGGTCATG TGAGAAGGTTCAGTTGGAAGATCTCACTCACCGGGTGGATAACCTGGTGGAGAGGCAAGTCAGTTTATTATCCTTCTTAGAGAAATCTGTTCAGAATCCT GCATTTGTTAAACTTCTAATTGACAAGATCGAAGCCATGGATGTGTCCTCGTATAGCAAGAAAAGACGATTGCCTCAACTCGAGGAATCAAGGCCAGTTG TTATTGAAAACAATGCTTTATACTGCAGTTCTAGGCCTGAGTTTGGAAATGTCATCCACCAAGATTTCTCCAGCAAGCTGAGATTGGAGTTATCTCCTGC TGTCTCCGATATTAATTTGTTCTCTCACAGCACTCAGAGCTCAAATGACGATGGGACTAGTCTACAAGGGATGTTCTCTGGCCCCGAGCCGAGAGATGCA GCATCATTAAGGACACCGGGTATGCTCTTTTCAGCACCAGAAACATTAGACCTTTCAGATACTGGCACTTCATGTACATTCAAGGCTGATTCCGCTTTCC CAAGAAAAGTAGCAGCGAGTGAGAGATTGGGGTTGCTGTCACTGCAGCCAAATTCAGATTCTAATGATGAAGGCGATGGACATATTTCCTGCCTCTTGAA TCTCTCTCTGGCTTCATGTTCTCTGCAAATAAACAAAAGCCAATCATCTAAGGTGGCTCATGAAGGTCAGGAGATGACAACATCTCCAGAGTTGAGGTCC AGTGTGAAGGATACAGAATGTGACACGAGAACCATACTAAGGAATCCAAGCATGAGTATTGATGAGAAACCACACATAGCCCCTGCGCCAAACAAAAATG GTCCTCCAGGTCGAGTGAATGATGTTTTCTGGGAACAGTTCCTAACTGAACAACCAGGCTCCTCTGGAAATGAGGAGGCTAGTTCTCATTATAGAGCAAA CCCATACGATGAACAGGAAGATCGAAGATCAGGACATGGATTGTCTAGAAATAATAGGAGCATGGAGCAGCTGTCTCTTTGA
AA sequence Show only first row Show all	>Lus10022546 pacid=23166946 polypeptide=Lus10022546 locus=Lus10022546.g ID=Lus10022546.BGIv1.0 annot-version=v1.0 MESAIPTSTTAAGGGGGVGTAPFLIKTYDMVDDMSTDDIVSWSSSNNSFVVWDPPEFARRLLTAFARRLLPAYFKHNNFSSFIRQLNTYGFRKSDPERWE FSNEEFIKGQKHLLKNIHRRKPIHSHSHPQVSSDPERAAFDEEIERLSREKAQLQASLVRCEKERSCEKVQLEDLTHRVDNLVERQVSLLSFLEKSVQNP AFVKLLIDKIEAMDVSSYSKKRRLPQLEESRPVVIENNALYCSSRPEFGNVIHQDFSSKLRLELSPAVSDINLFSHSTQSSNDDGTSLQGMFSGPEPRDA ASLRTPGMLFSAPETLDLSDTGTSCTFKADSAFPRKVAASERLGLLSLQPNSDSNDEGDGHISCLLNLSLASCSLQINKSQSSKVAHEGQEMTTSPELRS SVKDTECDTRTILRNPSMSIDEKPHIAPAPNKNGPPGRVNDVFWEQFLTEQPGSSGNEEASSHYRANPYDEQEDRRSGHGLSRNNRSMEQLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	2.0	0.8953
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	5.0	0.8904
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	6.6	0.9172
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10011254 [exp]	9.4	0.8588
AT1G58170			Disease resistance-responsive ...		Lus10018340 [exp]	11.0	0.8584
AT3G61800			unknown protein		Lus10004000 [exp]	12.7	0.8873
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	14.5	0.8703
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	15.2	0.8937
AT4G30790			unknown protein		Lus10007701 [exp]	16.7	0.8500
AT1G23780			F-box family protein (.1)		Lus10006139 [exp]	17.3	0.8579

Compare expression of checked genes

Lus10022546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.