Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32830 96 / 1e-24 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT2G38940 93 / 1e-23 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT3G54700 91 / 6e-23 PHT1;7 phosphate transporter 1;7 (.1) AT5G43360 91 / 7e-23 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43350 91 / 7e-23 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43370 85 / 7e-21 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43340 39 / 0.0002 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016635 [exp] 115 / 7e-32 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10011826 [exp] 96 / 7e-25 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 96 / 1e-24 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10003560 [exp] 94 / 8e-24 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 91 / 1e-22 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10014754 [exp] 89 / 2e-22 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10033866 [exp] 64 / 1e-14 AT2G38940 199 / 1e-62 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10022934 [exp] 54 / 3e-10 AT3G54700 155 / 1e-51 phosphate transporter 1;7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318500 [exp] 97 / 5e-25 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G072000 [exp] 96 / 9e-25 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071600 [exp] 94 / 4e-24 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 89 / 2e-22 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071700 [exp] 87 / 8e-22 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175700 [exp] 74 / 8e-17 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175500 [exp] 69 / 2e-15 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.002G038900 [exp] 65 / 8e-14 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071500 [exp] 63 / 4e-13 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.019G061900 [exp] 37 / 0.0005 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022547 pacid=23166902 polypeptide=Lus10022547 locus=Lus10022547.g ID=Lus10022547.BGIv1.0 annot-version=v1.0 ATGGTGGGTGCGTTCGGGTTCTTGTACGCGGCGCAGTCTACGGACCCGAAGAAGACGGATGCGGGTTACCCGACGGGGATTGGGGTGAAGAACTCATTGA TAGTTTTGGGGTGTATTAATTTCCTGGGGATGTTGTTCACGCTGCTGGTGCCGGAGTCGAATGGGAAGTCACTGGAGGAGCTTTCCGGCGAGAATGAAGA GGAGGAGAGCAGCGGGAATGAAGCAGCTGGCACGGGAAGGACTGTGCCCATATGA
AA sequence Show only first row Show all	>Lus10022547 pacid=23166902 polypeptide=Lus10022547 locus=Lus10022547.g ID=Lus10022547.BGIv1.0 annot-version=v1.0 MVGAFGFLYAAQSTDPKKTDAGYPTGIGVKNSLIVLGCINFLGMLFTLLVPESNGKSLEELSGENEEEESSGNEAAGTGRTVPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Lus10022547 [exp]	0	1
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022548 [exp]	1.4	0.9127
AT5G62350			Plant invertase/pectin methyle...		Lus10031713 [exp]	1.7	0.8755
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10033886 [exp]	2.8	0.8780
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	8.1	0.8664
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	8.9	0.8679
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	9.0	0.8553
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	10.2	0.8602
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	11.0	0.8455
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	12.4	0.8626
AT1G60783			unknown protein		Lus10026693 [exp]	14.7	0.8671

Compare expression of checked genes

Lus10022547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.