Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13800 337 / 2e-115 Protein of unknown function (DUF803) (.1) AT3G23870 333 / 5e-114 Protein of unknown function (DUF803) (.1) AT1G71900 310 / 1e-104 Protein of unknown function (DUF803) (.1) AT1G34470 297 / 3e-99 Protein of unknown function (DUF803) (.1) AT4G09640 279 / 6e-92 Protein of unknown function (DUF803) (.1) AT4G38730 246 / 9e-80 Protein of unknown function (DUF803) (.1) AT2G21120 243 / 1e-78 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016636 [exp] 333 / 6e-115 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 295 / 1e-98 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 292 / 5e-98 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 276 / 3e-91 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 262 / 5e-86 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 256 / 3e-83 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 246 / 2e-79 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 207 / 3e-65 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318700 [exp] 342 / 1e-117 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 309 / 2e-104 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 305 / 7e-103 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 297 / 9e-100 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 266 / 2e-87 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 258 / 4e-84 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 257 / 6e-84 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 256 / 3e-83 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 244 / 5e-79 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10022549 pacid=23166940 polypeptide=Lus10022549 locus=Lus10022549.g ID=Lus10022549.BGIv1.0 annot-version=v1.0 ATGGCCTGTTGGCTGGATGGCTTCGTTTGTGATCTTGTTGTTTTGGTTTTATTTAGGCTAGTGGAATCGGAGATCTTGGCACTCGGTTGTTTGGTGTTCC AGCTTCTTGTATGGACGATGGGGATGTCACGTGATAATTTACATAGACTTATATTGGCTGTTTCTTCAAGCATTTTCATTGGCTCCAGCTTCATTATCAA GAAGAAAGGCCTCAAGAAGGCTGCCAACACTGGAACCAGAGCAGGTATGGGAGGTTACTCCTATTTGTATCAACCATGGTGGTGGGCTGGAATGATTACA ATGATTTTGGGAGAAATAGCTAATTTTGCAGCTTATGCATTTGCTCCTGCGATTCTCGTCACTCCCTTGGGAGCTCTAAGTATTATTTTCAGTGCAGTGC TGGCACATTTCATTTTGAAGGAAAAATTACACATCTTTGGGGTGCTTGGATGTGTTCTATGTGTCGTAGGCTCCTCAACTATTGTCCTTCATGCCCCACA AGAAAGAAGTATTGAGTCTGTTAGGCAAGTCTGGCAGCTTGCTACAGAACCAGGTTTCCTTGTCTACTCCGCCCAAGTCGTGATTGCAGTTTCTGTCCTC ATTTTCTACTGCGTCCCCCGGTATGGGCAGAATCATATGATAGTTTATGTAGGGATTTGCTCTCTGATGGGTTCCCTTACGGTTATGAGTGTGAAAGCAG TGAGCATCGCTCTGAAGCTTACTTTTTCTGGAATGAACCAGTTCGTCTATTTTGAGACATGGATTTTCACAATAATCGTTATCACTTGTTGCCTTATTCA GATCAACTACTTGAATAAGGATTGGGACTCGCAGAATGCATCACAAATAGCAACAGAGCTATGCGGGTTTGTCACAATCCTATCAGGGACATTTCTGCTA CATAGAACAAAAGATATGGGGAACACTCCAGAAGAGGAAGCCCCTGTCTTCCCCAACACTAACAACAGAACCCCAGAAACCACTGTTTAG
AA sequence Show only first row Show all	>Lus10022549 pacid=23166940 polypeptide=Lus10022549 locus=Lus10022549.g ID=Lus10022549.BGIv1.0 annot-version=v1.0 MACWLDGFVCDLVVLVLFRLVESEILALGCLVFQLLVWTMGMSRDNLHRLILAVSSSIFIGSSFIIKKKGLKKAANTGTRAGMGGYSYLYQPWWWAGMIT MILGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHIFGVLGCVLCVVGSSTIVLHAPQERSIESVRQVWQLATEPGFLVYSAQVVIAVSVL IFYCVPRYGQNHMIVYVGICSLMGSLTVMSVKAVSIALKLTFSGMNQFVYFETWIFTIIVITCCLIQINYLNKDWDSQNASQIATELCGFVTILSGTFLL HRTKDMGNTPEEEAPVFPNTNNRTPETTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	0	1
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	1.0	0.8570
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	4.2	0.7867
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	5.5	0.7713
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	7.7	0.7757
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	10.5	0.7812
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	13.9	0.7802
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	15.9	0.7223
AT2G17550			unknown protein		Lus10016693 [exp]	20.5	0.7391
AT2G40480			Plant protein of unknown funct...		Lus10029056 [exp]	22.6	0.7257
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	22.8	0.7654

Compare expression of checked genes

Lus10022549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.