Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 157 / 3e-48 J20 DNAJ-like 20 (.1.2) AT3G47940 66 / 9e-13 DNAJ heat shock family protein (.1) AT1G59725 66 / 1e-12 DNAJ heat shock family protein (.1) AT5G01390 64 / 2e-12 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 64 / 5e-12 DNAJ heat shock family protein (.1.2) AT3G14200 63 / 5e-12 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 64 / 6e-12 DNAJ heat shock family protein (.1) AT4G39960 64 / 8e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 63 / 1e-11 DNAJ heat shock family protein (.1) AT1G10350 62 / 2e-11 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016637 [exp] 317 / 8e-111 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10002356 [exp] 127 / 9e-37 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 126 / 4e-36 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003150 [exp] 125 / 8e-36 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10003149 [exp] 115 / 2e-31 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10017263 [exp] 72 / 2e-15 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10013981 [exp] 67 / 5e-13 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 67 / 5e-13 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10041906 [exp] 65 / 5e-13 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058400 [exp] 173 / 1e-54 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 160 / 1e-49 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.007G088900 [exp] 72 / 1e-15 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.004G172300 [exp] 70 / 6e-15 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 70 / 7e-15 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 70 / 9e-15 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 67 / 6e-14 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 69 / 1e-13 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.005G160200 [exp] 69 / 2e-13 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G131800 [exp] 64 / 2e-13 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10022550 pacid=23166891 polypeptide=Lus10022550 locus=Lus10022550.g ID=Lus10022550.BGIv1.0 annot-version=v1.0 ATGGCCAGCTACCGATTGACAATCCCATCGCCCGACGCCGTTCTCTTCGGTGTCTGTTCCTCCCCTTCCCCCAGATCCCCCGACCCTGCTATTCGTATCA GATCTCCGATTGGACGCCAGGGAAGTTTTTCTTTCAGGACTAGGGCCACCGCTACTGCCACAGCCAACGACACCGCAACCGACGACAGTTACACCTCCGC CTCTGCTGCCGCTGCCGATGCCACTGCCGATGCGAGCTTTTACTATCTGCTGGGAATACACGAGTCTGTGACACAGCCTGATATTAAGCAGGCGTACAAG CAGCTGGCCCTGAAGTATCACCCGGACGTATCTCCCCCCGACCGGGTGGAGGAGTACACCCAGAAGTTCATTCTAGTCCAAGAGGCTTACGAGACGCTGT CCGATCCTCGCCGCAGGGCTCTCTACGATCGTGATATGTCCAGAGGTTTGCACTTCGCCTTCTCTTCTAGGAGACGTTACTCCAGCGATGAGGAAATTGG AGAAAGTGGATTCTGGAAAAGTCAGTGGGAGTCTCAGCTATCGCAGCTGAAGAGAAGAAGCTCAAGCAGGAGTGTTAATGGCAGCGAGAACATGTCATGG GCAGCTCGAATTCGCCGCCAACGGGAGGAGATGTCTGCAACTGCAAGTGGAGTATAA
AA sequence Show only first row Show all	>Lus10022550 pacid=23166891 polypeptide=Lus10022550 locus=Lus10022550.g ID=Lus10022550.BGIv1.0 annot-version=v1.0 MASYRLTIPSPDAVLFGVCSSPSPRSPDPAIRIRSPIGRQGSFSFRTRATATATANDTATDDSYTSASAAAADATADASFYYLLGIHESVTQPDIKQAYK QLALKYHPDVSPPDRVEEYTQKFILVQEAYETLSDPRRRALYDRDMSRGLHFAFSSRRRYSSDEEIGESGFWKSQWESQLSQLKRRSSSRSVNGSENMSW AARIRRQREEMSATASGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	0	1
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10038592 [exp]	1.0	0.9180
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	7.7	0.8705
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10003073 [exp]	9.8	0.8783
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	15.2	0.8890
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	20.0	0.8846
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	22.4	0.8750
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	22.4	0.8418
AT2G18890			Protein kinase superfamily pro...		Lus10006957 [exp]	23.5	0.8288
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	26.4	0.8839
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	28.8	0.8788

Compare expression of checked genes

Lus10022550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.