Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13850 168 / 1e-54 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 159 / 4e-51 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G74230 131 / 3e-38 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G61030 131 / 4e-38 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT5G47320 122 / 2e-35 RPS19 ribosomal protein S19 (.1) AT2G21660 99 / 4e-27 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT3G08000 91 / 4e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G18630 89 / 2e-23 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT4G39260 88 / 2e-23 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT4G13860 87 / 3e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016639 [exp] 237 / 8e-82 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 203 / 2e-68 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 197 / 5e-66 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10021154 [exp] 141 / 4e-42 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 140 / 4e-39 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 130 / 2e-38 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 127 / 7e-37 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10040454 [exp] 97 / 1e-25 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 94 / 4e-25 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059000 [exp] 167 / 1e-54 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 161 / 1e-51 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 158 / 7e-51 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 140 / 2e-42 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.012G061600 [exp] 140 / 5e-42 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.009G116400 [exp] 100 / 1e-27 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.004G155300 [exp] 100 / 1e-27 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G236300 [exp] 94 / 9e-26 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.014G157300 [exp] 92 / 8e-25 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G207100 [exp] 91 / 4e-23 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10022551 pacid=23166927 polypeptide=Lus10022551 locus=Lus10022551.g ID=Lus10022551.BGIv1.0 annot-version=v1.0 ATGGCGTTTTGCAACAAATTGGGTAGCCTAGTCAGGCAGAGTGTATCTCAGAATGGTCCTTCCCCGATGGGATCTATGTTGAACTCCGTCCGTTGCATGT CAAGCAAGCTCTTTGTCGGAGGTCTTTCTTATTCCACCGATGATCAAACTCTCAAGGAGGCCTTTGATAGTTATGGTGATGTGATTGATGCCAAAGTGAT CATTGATAGAGACACTGGTAGGTCACGAGGGTTTGGATTTGTGAATTTCTCAGACAGCGAGGCTGCAAACTCTGCATTGTCAGGCATGGATGGACAGGAT TTGCACGGTAGGAACATACGCGTGAGTTTGGCCAACGAAAGACAGAGTGCTCCACGAACCTACAACAACTACCGTGGTGGTGGTGGTGGTTATGATGGTG GGAACAGAGGATTCGGTGGGAATGATGGGTACTAG
AA sequence Show only first row Show all	>Lus10022551 pacid=23166927 polypeptide=Lus10022551 locus=Lus10022551.g ID=Lus10022551.BGIv1.0 annot-version=v1.0 MAFCNKLGSLVRQSVSQNGPSPMGSMLNSVRCMSSKLFVGGLSYSTDDQTLKEAFDSYGDVIDAKVIIDRDTGRSRGFGFVNFSDSEAANSALSGMDGQD LHGRNIRVSLANERQSAPRTYNNYRGGGGGYDGGNRGFGGNDGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	0	1
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	2.8	0.9655
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	3.2	0.9627
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	3.5	0.9579
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	9.4	0.9393
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	9.8	0.9569
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	10.7	0.9503
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	11.0	0.9537
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	12.4	0.9421
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	12.7	0.9404
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	13.3	0.8921

Compare expression of checked genes

Lus10022551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.