Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23820 665 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT1G02000 548 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 545 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 529 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 518 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 517 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G23920 92 / 3e-20 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 90 / 2e-19 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT4G10960 88 / 6e-19 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT3G53520 85 / 2e-17 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016640 [exp] 775 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10015876 [exp] 547 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 545 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 543 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 540 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10032391 [exp] 511 / 4e-180 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10031127 [exp] 509 / 1e-179 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 508 / 4e-179 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 493 / 3e-173 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059100 [exp] 680 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 675 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.002G146500 [exp] 550 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 550 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.012G128200 [exp] 510 / 2e-180 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 510 / 5e-180 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.006G178500 [exp] 491 / 2e-172 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.018G100400 [exp] 483 / 3e-169 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 170 / 4e-51 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 97 / 4e-22 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10022552 pacid=23166918 polypeptide=Lus10022552 locus=Lus10022552.g ID=Lus10022552.BGIv1.0 annot-version=v1.0 ATGGGGTCACCACCGGATACCAGCAAGACAATCAAGCTAGAGCGCTACAACAGCTACTTGCGCCGGATACAGAGCACTAAGCTCTTAAACGCATCCTCCA AGCTCCTTTTTCGCGCTACTCTCCTCATAGCTCTCCTCCTCATTCTCTTCTTCACCATCAATTACCCTCACCTCTCCGACCATCACCACCTCCATTCCGA CTCCGCAATTCACCGACACAGCTTCTTATCCACTGGTGGCAGCTTTTTCTCCTCTTCCTTTTCCACTTCCTCCTCCTCCTCCGCAATTGGCGGATCCGCT TGGGAGAAACAGGTCCGTCGCTCCTCCACTCCCCGCCGCCCCAACGGATTCTCCATCCTTGTGACTGGAGCTGCCGGATTCGTCGGAAGTCACTGCTCCC TCGCGCTCAGGAAGCGAGGCGATGGAGTTCTCGGCCTCGACAATTTCAACAGCTATTATGATCCTTCGCTCAAGAGATCTCGCCAGGAGCTGTTGCTCAA GCACGAGGTGTTCATCGTAGAAGGAGATCTGAACGATGGACTGCTTCTCACCAAGCTATTCGACGTTGTCCCCTTCTCCCACATCCTCCACTTGGCTGCA CAGGCTGGAGTCCGCTACGCGATGCAGAATCCCCAATCTTATATCAGCTCCAAAATTGCCGGATTCATCAACCCCCTGGAAGTTGCCAAGGCCGCCAATC CCCAGCCGGCGATCGTCTGGGCGTCCTCCAGCTCCGTCTACGGACTGAACACCAATGTCCCCTTCTCCGAGAGCCACCGCACCGACAGGCCGGCGAGCCT CTATGCCGCCACGAAGAAGGCCGGAGAGGAAATTGCACACACCTACAACCACATCTACGGATTGTCCCTGACCGGACTCCGATTCTTCACGGTGTACGGC CCCTGGGGACGCCCTGACATGGCTTACTTCTTCTTCACCAAGGACATCCTGAACGGGAAATCGATCGATGTGTACGAGACTCAGGAAGGGAAGCAGGTAG CGCGTGACTTCACGTACATAGACGACGTGGTGAAGGGATGCGTTGGGGCGCTGGATACGGCGGAGAAGAGCACCGGAAGCGGAGGGAAGAAGAAAGGGGC AGCCCAGCTTAGGGTTTACAACTTGGGGAACACATCGCCGGTGCCGGTGGGGCAGCTGGTGTCGATATTGGAGGCGCTGCTGAGGAAGAAGGCGAAGAAG CACGTGGTAACGATGCCTCGAAACGGCGACGTTCCATTCACCCACGCGAACGTGAGCCAGGCGTTTAGGGATTTCGGGTACAAGCCGACGACGGATTTAG CGAGCGGGTTGAGAAAGTTCGTGAAGTGGTACGTTGGTTATTACGGGGAGAAGACGAGGGTAAAGAAGGAAACAGATGAGGTGGTGGACAAGTCATCAAC ATGA
AA sequence Show only first row Show all	>Lus10022552 pacid=23166918 polypeptide=Lus10022552 locus=Lus10022552.g ID=Lus10022552.BGIv1.0 annot-version=v1.0 MGSPPDTSKTIKLERYNSYLRRIQSTKLLNASSKLLFRATLLIALLLILFFTINYPHLSDHHHLHSDSAIHRHSFLSTGGSFFSSSFSTSSSSSAIGGSA WEKQVRRSSTPRRPNGFSILVTGAAGFVGSHCSLALRKRGDGVLGLDNFNSYYDPSLKRSRQELLLKHEVFIVEGDLNDGLLLTKLFDVVPFSHILHLAA QAGVRYAMQNPQSYISSKIAGFINPLEVAKAANPQPAIVWASSSSVYGLNTNVPFSESHRTDRPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYG PWGRPDMAYFFFTKDILNGKSIDVYETQEGKQVARDFTYIDDVVKGCVGALDTAEKSTGSGGKKKGAAQLRVYNLGNTSPVPVGQLVSILEALLRKKAKK HVVTMPRNGDVPFTHANVSQAFRDFGYKPTTDLASGLRKFVKWYVGYYGEKTRVKKETDEVVDKSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	0	1
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	1.0	0.9479
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	1.4	0.9395
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10036213 [exp]	4.9	0.8970
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	6.0	0.9030
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	6.3	0.9025
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	7.3	0.8946
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	7.3	0.9161
AT5G21070			unknown protein		Lus10026764 [exp]	8.1	0.8929
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	8.8	0.8902
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	9.5	0.9002

Compare expression of checked genes

Lus10022552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.