Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13870 232 / 2e-75 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT4G13885 80 / 4e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016641 [exp] 152 / 2e-46 AT4G13870 108 / 2e-30 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 84 / 4e-19 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10039164 [exp] 84 / 8e-19 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10016642 [exp] 68 / 4e-14 ND 38 / 8e-04 Lus10039591 [exp] 58 / 7e-10 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 55 / 8e-09 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029478 [exp] 48 / 2e-06 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036491 [exp] 44 / 9e-05 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 43 / 0.0001 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059200 [exp] 306 / 6e-104 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.001G320201 [exp] 148 / 6e-44 AT4G13870 0 / 1 Werner syndrome-like exonuclease (.1.2) Potri.011G116000 [exp] 83 / 6e-19 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028700 [exp] 74 / 3e-15 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 71 / 3e-14 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10022556 pacid=23166924 polypeptide=Lus10022556 locus=Lus10022556.g ID=Lus10022556.BGIv1.0 annot-version=v1.0 ATGTATTCTGCCGTAAGAAGCGCCGCAATTTCCTGTTCTTCCTCGCCTTTTCCGTCTGTTCCAGATTTAGACGAGCCCTTGACGGAGCAGGATCTTGAAG CCATTGACGTAATAGAAGCTACATTCCTATCATTGACTCCCTCCTCCATCTCAGGCTCTTCAATTAAGGAACAAGATTCGACCGGCCAAGAGGAACGAAC CCAGAAAAGACCCTGCCGCCGATTGCCAAGCTCCGTACTTGATCTCTGTTCACCGTTTCCTCTTTCTCCTTGTAAAGCTGATACAAAAATTAGGTACCCT GCAATCAATTTCGGAGGCCGAATCTCGTATAGTAGGACCTCAATGGAGGTGGAAAAGGATGCGAGGGAGCTTCTTATGACCCTTGAAGCTAAAAGGGGAG AAGCTAAAAGGGGAGCAAGTGGCCAAGTTGCTGTTGGTGCTTTGCCCAGTAAGGCTGCTGTGATGCAGCTGTGTGCAGATGTTGGCCAATGCTACGTGAT GCATATTATTCATTCTGGAATCACTCCCAGTCTACGGCTGCTTCTTCACGATGACACACTCTTAAAAGTTGGCGTTGGGATTGGCAATGATTCTACCAAG GTTTTTAGAGATTATAATGTCTCTGTTCAAGCTGTAGAGGACCTTTCCTACCTAGCTAATCAAAAGCTTGGTGGAGAACCAAAAAAATGGGGTCTTGCAA CTTTAGCGGAGACGCTTGTCTCCAAAGAGCTTCCTAAGCCCAAAAAGATCAGACTTGGAAACTGGGAAGTTAAAGTCCTAACAAAGAAGCAAATACAATA CGCAGCTACAGATGCTTTTGCTTCTTGGCAACTTTACCAGGTACTAAAAGATCTTGCAGACACAAAGAAGTGTACCGATGAAGCAAGTGGAAGTGTTCCT TGA
AA sequence Show only first row Show all	>Lus10022556 pacid=23166924 polypeptide=Lus10022556 locus=Lus10022556.g ID=Lus10022556.BGIv1.0 annot-version=v1.0 MYSAVRSAAISCSSSPFPSVPDLDEPLTEQDLEAIDVIEATFLSLTPSSISGSSIKEQDSTGQEERTQKRPCRRLPSSVLDLCSPFPLSPCKADTKIRYP AINFGGRISYSRTSMEVEKDARELLMTLEAKRGEAKRGASGQVAVGALPSKAAVMQLCADVGQCYVMHIIHSGITPSLRLLLHDDTLLKVGVGIGNDSTK VFRDYNVSVQAVEDLSYLANQKLGGEPKKWGLATLAETLVSKELPKPKKIRLGNWEVKVLTKKQIQYAATDAFASWQLYQVLKDLADTKKCTDEASGSVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	0	1
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10032510 [exp]	2.2	0.8400
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	3.0	0.8687
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	4.0	0.8421
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	4.5	0.8657
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	6.5	0.8536
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	7.0	0.8349
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	9.4	0.8313
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10023726 [exp]	10.9	0.8158
AT2G16595			Translocon-associated protein ...		Lus10012169 [exp]	11.0	0.8256
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	11.6	0.8280

Compare expression of checked genes

Lus10022556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.