Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13940 565 / 0 MEE58, EMB1395, SAHH1, HOG1, ATSAHH1 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) AT3G23810 558 / 0 SAHH2, ATSAHH2 S-adenosyl-l-homocysteine (SAH) hydrolase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016645 [exp] 592 / 0 AT4G13940 576 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Lus10043156 [exp] 563 / 0 AT4G13940 907 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Lus10032593 [exp] 541 / 0 AT4G13940 884 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G059400 [exp] 576 / 0 AT4G13940 917 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4) Potri.001G320500 [exp] 570 / 0 AT4G13940 923 / 0.0 MATERNAL EFFECT EMBRYO ARREST 58, HOMOLOGY-DEPENDENT GENE SILENCING 1, EMBRYO DEFECTIVE 1395, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, S-adenosyl-L-homocysteine hydrolase (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00670 [flax] [poplar] AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF05221 [flax] [poplar] AdoHcyase S-adenosyl-L-homocysteine hydrolase
Representative CDS sequence Show only first row Show all	>Lus10022560 pacid=23166893 polypeptide=Lus10022560 locus=Lus10022560.g ID=Lus10022560.BGIv1.0 annot-version=v1.0 ATGAGGGATAGATTGGTTGGCGTTTCTGAGGAGACCACTACTGGAGTCAAGAGGCTTTACCAGATGCAAGAGAATGGCACCCTTCTCTTCCCTGCTATCA ATGTCAACGACTCTGTCACCAAGAGCAAGTTCGATAACTTGTATGGTTGCCGTCACTCCCTCCCCGATGGTCTGATGAGGGCTACCGACGTTATGATCGC CGGAAAGGTTGCTGTTGTTTTGGGATATGGTGATGTTGGAAAGGGATGTGCTGCTGCCATGAAGCAGGCTGGAGCTCGCGTCATTGTGACCGAGATTGAT CCCATCTGTGCCCTTCAGGCTCTTATGGAAGGTCTCCAGGTGTTGACCCTTGAGGATTGCGTTGCGGAGGCTGACATCTTCGTCACCACCACTGGAAACA AGGACATCATCATGGTTGACGACATGAGGAAGATGAAGAACAACGCCATTGTTTGCAACATCGGTCACTTTGACAATGAGATTGACATGAATGGACTTGA GACCTTCCCTGGAGTGAAGCGCATCACCATCAAGCACCAGACCGACCGGGGGGTGTTCCCAGACACCAAGAGCGGCATCATTGTGTTGGCAGAGGGACGT CTCATGAATTTGGGATGTGCAACTGGTCACCCTAGCTTCGTGATGTCCTGCTCGTTCACCAACCAGGTGATCGCTCAGCTTGAGCTCTGGAACGAGAGAG CCAGTGGCAAGTATGAGAAGAAGGTGTACGTTCTGCCCAAGCACCTTGACGAGAAGGTGGCTTCGCTTCATCTTGGAAAGCTTGGAGCTAGGCTCACCAA GCTGTCCAAGGACCAGGCTGACTACATCAGTGTTCCAGTTGAGGGTCCTTACAAGCCTGCTCAGTACAGGTACTGA
AA sequence Show only first row Show all	>Lus10022560 pacid=23166893 polypeptide=Lus10022560 locus=Lus10022560.g ID=Lus10022560.BGIv1.0 annot-version=v1.0 MRDRLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVLGYGDVGKGCAAAMKQAGARVIVTEID PICALQALMEGLQVLTLEDCVAEADIFVTTTGNKDIIMVDDMRKMKNNAIVCNIGHFDNEIDMNGLETFPGVKRITIKHQTDRGVFPDTKSGIIVLAEGR LMNLGCATGHPSFVMSCSFTNQVIAQLELWNERASGKYEKKVYVLPKHLDEKVASLHLGKLGARLTKLSKDQADYISVPVEGPYKPAQYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	0	1
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	1.7	0.9519
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	2.8	0.9433
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	2.8	0.9327
AT5G57460			unknown protein		Lus10028963 [exp]	3.7	0.9345
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	3.9	0.9393
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	4.9	0.9365
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	5.0	0.9352
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	5.5	0.9230
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	6.9	0.9347
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	8.1	0.9111

Compare expression of checked genes

Lus10022560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.